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Development of a method to identify single molecule adducts generated on genomic DNA

Research Project

Project/Area Number 15K06849
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Tumor biology
Research InstitutionToyo University

Principal Investigator

Shiizaki Kazuhiro  東洋大学, 生命科学部, 准教授 (20391112)

Co-Investigator(Renkei-kenkyūsha) TOTSUKA Yukari  国立研究開発法人国立がん研究センター, 研究所, ユニット長 (40373401)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2015: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
KeywordsDNA付加体 / 変異原物質 / 次世代シークエンサー / 第三世代シークエンサー / 一分子検出 / 第三世代シーケンサー
Outline of Final Research Achievements

It is well documented that DNA adducts are associated with carcinogenesis. The 3rd generation of sequencing technology will enable us to determine formation of adducts on DNA molecule. We synthesized an oligonucleotide harboring one base of DNA-adduct, and performed sequencing analysis. Polymerase elongation delay was observed at the site of DNA adducts. Next, we enriched DNA fragments including adducts by using immuno-precipitation method because the amount of DNA adducts occurring in the genomic DNA was limited. By combining these methods, the relationship between adduct formation and mutations at critical positions would be clarified.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (10 results)

All 2017 2016 2015

All Journal Article (4 results) (of which Peer Reviewed: 4 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (6 results) (of which Invited: 3 results)

  • [Journal Article] Influence of GSH S-transferase on the mutagenicity induced by dichloromethane and 1,2-dichloropropane2017

    • Author(s)
      N Akiba, K Shiizaki, Y Matsushima, O Endo, K Inaba and Y Totsuka
    • Journal Title

      Mutagenesis

      Volume: 32 Issue: 4 Pages: 455-462

    • DOI

      10.1093/mutage/gex014

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Modulation of benzo[a]pyrene-DNA adduct formation by CYP1 inducer and inhibitor2017

    • Author(s)
      Shiizaki Kazuhiro、Kawanishi Masanobu、Yagi Takashi
    • Journal Title

      Genes Environ.

      Volume: 39 Issue: 1 Pages: 1-8

    • DOI

      10.1186/s41021-017-0076-x

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Modulation of benzo[a]pyrene-DNA adduct formation by CYP1 inducer and inhibitor2017

    • Author(s)
      Kazuhiro Shiizaki, Masanobu Kawanishi; Takashi Yagi
    • Journal Title

      Genes and Environment

      Volume: 印刷中

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Construction of sensitive reporter assay yeasts for comprehensive detection of ligand activities of human corticosteroid receptors through inactivation of CWP and PDR genes2015

    • Author(s)
      Ito-Harashima S, Shiizaki K, Kawanishi M, Kakiuchi K, Onishi K, Yamaji R, Yagi T.
    • Journal Title

      Journal of pharmacological and toxicological methods

      Volume: 74:41-52. Pages: 41-52

    • DOI

      10.1016/j.vascn.2015.06.001

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Presentation] DNA付加体形成部位の同定に関する新規アプローチ2017

    • Author(s)
      椎崎一宏
    • Organizer
      第16 回 分子予防環境医学研究会 シンポジウム
    • Place of Presentation
      熊本市国際交流会館(熊本県熊本市)
    • Year and Date
      2017-02-03
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] 次世代シークエンサーと DNA アダクトーム解析の統合による発がん要因の探索2017

    • Author(s)
      前迫 侑也、善家 茜、エルザワハリ アスマ 、古川 英作 、加藤 護 、白石 航也、河野 隆志、椎崎 一宏、 戸塚 ゆ加里
    • Organizer
      日本環境変異原学会第46回大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 生体を模倣したナノマテリアルの新規毒性評価システムの確立2017

    • Author(s)
      神尾 翔真、斎藤 春五、渡邉 昌俊 、椎崎 一宏、戸塚 ゆ加里
    • Organizer
      日本環境変異原学会第46回大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] DNA付加体形成部位の同定に関する新規アプローチ2017

    • Author(s)
      椎崎一宏
    • Organizer
      16 回 分子予防環境医学研究会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 職業性胆管がん発生に関与する1,2- ジクロロプロパンのDNA 付加体の網羅的な解析(アダクトーム解析)2016

    • Author(s)
      前迫 侑也、善家 茜、古川 英作、加藤 護、椎崎 一宏、中釜 斉、戸塚 ゆ加里
    • Organizer
      日本環境変異原学会第45回大会
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Year and Date
      2016-11-17
    • Related Report
      2016 Research-status Report
  • [Presentation] 複数の化学物質曝露による遺伝毒性  -核内受容体と薬物代謝酵素による毒性の修飾-2015

    • Author(s)
      椎崎一宏
    • Organizer
      日本環境変異原学会第44回大会
    • Place of Presentation
      九州大学馬出キャンパス コラボ・ステーション(福岡県福岡市)
    • Year and Date
      2015-11-27
    • Related Report
      2015 Research-status Report
    • Invited

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Published: 2015-04-16   Modified: 2019-03-29  

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