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Deciphering molecular chromatin dynamics at the chromosomal fragile site via genome editing

Research Project

Project/Area Number 15K06896
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Genome biology
Research InstitutionTottori University

Principal Investigator

Nakayama Yuji  鳥取大学, 生命機能研究支援センター, 助教 (40432603)

Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2015: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywords脆弱X症候群 / 染色体工学 / ゲノム編集 / トリプレットリピート / CGGリピート
Outline of Final Research Achievements

Fragile X syndrome is the most common form of familial intellectual disability, and is caused via expansion (destabilization) of CGG repeat present within the responsible gene FMR1 and gene inactivation accompanying it at the maternal propagation. In the present study, in order to elucidate a series of molecular pathological mechanisms, we tried to establish a system that can monitor the instability of repeat with fluorescence using chromosome engineering technology and genome editing and to identify factors related to it, Fluorescence monitoring system using genome editing failed to obtain the result reflecting the expression pattern of FMR1 originally recognized in humans. However, it was shown that chromosomal engineering operation is a very useful methodology for stable handling of chromosome fragile sites mainly composed of CGG repeats and the like.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (38 results)

All 2017 2016 2015

All Journal Article (12 results) (of which Peer Reviewed: 12 results,  Open Access: 8 results,  Acknowledgement Compliant: 1 results) Presentation (26 results) (of which Int'l Joint Research: 8 results)

  • [Journal Article] Epstein-Barr Virus Lytic Reactivation Activates B Cells Polyclonally and Induces Activation-Induced Cytidine Deaminase Expression: A Mechanism Underlying Autoimmunity and Its Contribution to Graves' Disease2017

    • Author(s)
      Nagata, K. Kumata, K. Nakayama, Y. Satoh, Y. Sugihara, H. Hara, S. Matsushita, M. Kuwamoto, S. Kato, M. Murakami, I. Hayashi, K.
    • Journal Title

      Viral Immunol

      Volume: 30 Issue: 3 Pages: 240-249

    • DOI

      10.1089/vim.2016.0179

    • Related Report
      2017 Annual Research Report 2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] <b>Tbx18-positive cells differentiated from murine ES cells serve as proepicardial progenitors to give rise to vascular smooth muscle cells and fibr</b><b>oblasts </b>2017

    • Author(s)
      IKEDA Nobuhito、NAKAZAWA Natsumi、KURATA Yasutaka、YAURA Hisako、TAUFIQ Fikri、MINATO Hiroyuki、YOSHIDA Akio、NINOMIYA Haruaki、NAKAYAMA Yuji、KUWABARA Masanari、SHIRAYOSHI Yasuaki、HISATOME Ichiro
    • Journal Title

      Biomedical Research

      Volume: 38 Issue: 4 Pages: 229-238

    • DOI

      10.2220/biomedres.38.229

    • NAID

      130005966981

    • ISSN
      0388-6107, 1880-313X
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 微小核の生成と微小核細胞の運命2017

    • Author(s)
      中山祐二,井上敏昭
    • Journal Title

      放射線生物研究Radiation Biology Research Communications

      Volume: 52(3) Pages: 263-276

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Prion Protein and Stage Specific Embryo Antigen 1 as Selection Markers to Enrich the Fraction of Murine Embryonic Stem Cell-Derived Cardiomyocytes.2016

    • Author(s)
      Ikeda N, Nakayama Y, Nakazawa N, Yoshida A, Ninomiya H, and Shirayoshi Y.
    • Journal Title

      Yonago Acta medica

      Volume: 59 Pages: 126-134

    • NAID

      120005775321

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Antiproliferative Fate of the Tetraploid Formed after Mitotic Slippage and Its Promotion; A Novel Target for Cancer Therapy Based on Microtubule Poisons.2016

    • Author(s)
      Nakayama Y, Inoue T.
    • Journal Title

      Molecules

      Volume: 21 Issue: 5 Pages: 663-663

    • DOI

      10.3390/molecules21050663

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Regulation of functional KCNQ1OT1 lncRNA by beta-catenin2016

    • Author(s)
      Sunamura, N. Ohira, T. Kataoka, M. Inaoka, D. Tanabe, H. Nakayama, Y. Oshimura, M. Kugoh, H.
    • Journal Title

      Scientific reports

      Volume: 6 Issue: 1 Pages: 1-11

    • DOI

      10.1038/srep20690

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] A high number of IgG4-positive cells in gastric cancer tissue is associated with tumor progression and poor prognosis2016

    • Author(s)
      Miyatani, K. Saito, H. Murakami, Y. Watanabe, J. Kuroda, H. Matsunaga, T. Fukumoto, Y. Osaki, T. Nakayama, Y. Umekita, Y. Ikeguchi, M.
    • Journal Title

      Virchows Arch

      Volume: 468 Issue: 5 Pages: 549-557

    • DOI

      10.1007/s00428-016-1914-0

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Journal Article] Carvedilol Suppresses Apoptosis and Ion Channel Remodelling of HL-1 Cardiac Myocytes Expressing E334K cMyBPC.2015

    • Author(s)
      Endo R, Bahrudin U, Notsu T, Tanno S, Onohara T, Yamaguchi S, Ikeda N, Surastri B, Nakayama Y, Ninomiya H, Shirayoshi Y, Inagaki Y, Yamamoto K, Yoshida A, Hisatome I.
    • Journal Title

      Drug Res (Stuttg).

      Volume: 66 Issue: 03 Pages: 126-129

    • DOI

      10.1055/s-0035-1555772

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Recurrent Micronucleation through Cell Cycle Progression in the Presence of Microtubule Inhibitors2015

    • Author(s)
      Nakayama Yuji, Uno Narumi, Uno Katsuhiro, Mizoguchi Yamato, Komoto Shinya, Kazuki Yasuhiro, Nanba Eiji, Inoue Toshiaki, Oshimura Mitsuo
    • Journal Title

      Cell Structure and Function

      Volume: 40 Issue: 1 Pages: 51-59

    • DOI

      10.1247/csf.14005

    • NAID

      130004885868

    • ISSN
      0386-7196, 1347-3700
    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cellular uptake and in vivo distribution of polyhistidine peptides2015

    • Author(s)
      Iwasaki T, Tokuda Y, Kotake A, Okada H, Takeda S, Kawano T, Nakayama Y
    • Journal Title

      Journal of Controlled release

      Volume: 210 Pages: 115-124

    • DOI

      10.1016/j.jconrel.2015.05.268

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Journal Article] Reactivation of persistent Epstein-Barr virus (EBV) causes secretion of thyrotropin receptor antibodies (TRAbs) in EBV-infected B lymphocytes with TRAbs on their surface2015

    • Author(s)
      Nagata, K. Nakayama, Y. Higaki, K. Ochi, M. Kanai, K. Matsushita, M. Kuwamoto, S. Kato, M. Murakami, I. Iwasaki, T. Nanba, E. Kimura, H. Hayashi, K.
    • Journal Title

      Autoimmunity

      Volume: 48 Issue: 5 Pages: 1-8

    • DOI

      10.3109/08916934.2015.1022163

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Journal Article] miR-19b regulates hTERT mRNA expression though targeting PITX1 mRNA in melanoma cells.2015

    • Author(s)
      T. Ohira, N. Sunamura, Y. Nakayama, M. Osaki, F. Okada, M. Oshimura, H. Kugoh.
    • Journal Title

      Scientific Reports

      Volume: online Issue: 1 Pages: 1-9

    • DOI

      10.1038/srep08201

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] FIB/SEMを用いたHeLa細胞内染色体のその場観察による三次元構造解析法2017

    • Author(s)
      稲賀すみれ,中山祐二,伊藤勝治, 白井学,亀家俊夫,中根裕信,海藤俊行
    • Organizer
      第122回日本解剖学会
    • Place of Presentation
      長崎
    • Year and Date
      2017-03-28
    • Related Report
      2016 Research-status Report
  • [Presentation] 染色体の三次元構造解析におけるFIB/SEMの有用性と可能性2017

    • Author(s)
      中山祐二,稲賀すみれ,伊藤勝治, 白井学,許斐麻美,中澤英子,亀家俊夫,中根裕信,久郷裕之,海藤俊行
    • Organizer
      第68回染色体学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 分裂期染色体のFIB/SEMを用いた三次元構造解析と定量解析2017

    • Author(s)
      稲賀すみれ,中山祐二,伊藤勝治, 白井学,許斐麻美,中澤英子,亀家俊夫,中根裕信,久郷裕之,海藤俊行
    • Organizer
      第68回染色体学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] An integrated Chromosomal approach to decipher molecular mechanism of CGG repeat expansion in Fragile X syndrome2017

    • Author(s)
      Yuji Nakayama, Kaori Adachi, Daigo Inaoka, Mitsuo Oshimura,Hiroyuki Kugoh,Eiji Nanba
    • Organizer
      18th International Fragile X and Related Neurodevelopmental Disorders Workshop
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] An integrated Chromosome-based approach to decipher the mechanism of CGG repeat expansion in Fragile X syndrome2017

    • Author(s)
      中山祐二,足立香織,稲岡大悟,押村光雄,久郷裕之,難波栄二
    • Organizer
      日本人類遺伝学会第62回大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 脆弱X症候群ならびに脆弱X随伴振戦/失調症候群の遺伝学的検査体制の構築~保険診療でカバーされる外注検査となる~2017

    • Author(s)
      難波栄二, 足立香織,中山祐二,松浦徹,石井一弘,後藤雄一
    • Organizer
      第59回日本小児神経学会学術集会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 脆弱X症候群ならびに脆弱X症候群関連疾患の遺伝学的検査体制の構築2017

    • Author(s)
      足立香織,松浦徹,石井一弘,中山祐二,岡崎哲也,後藤雄一,難波栄二
    • Organizer
      日本人類遺伝学会第62回大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 脆弱X関連振戦/失調症候群(FXTAS)における RAN タンパク質 FMRpolyG の産生と病態との関与:Involvement of production and pathology of RAN protein FMRpolyG in fragile X-associated tremor / ataxia syndrome (FXTAS)2017

    • Author(s)
      塩田倫史, 中山祐二, 足立香織, 久郷裕之, 難波栄二
    • Organizer
      conBio2017:第40回日本分子生物学会年会、第90回日本生化学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Epstein-Barr virus reactivation induces immunoglobulin production through activation-induced cytidine deaminase expression of B cells from Graves’disease patients and controls.2016

    • Author(s)
      Nagata K, Kumata K, Nakayama Y, Satoh Y, Hara S, Matsushita M, Murakami I, Kuwamoto S, Kato M, Sugihara H, Hayashi K.
    • Organizer
      第45回 日本免疫学会学術集会
    • Place of Presentation
      沖縄
    • Year and Date
      2016-12-05
    • Related Report
      2016 Research-status Report
  • [Presentation] プラスミド免疫沈降法(PLIP)による特定のDNA配列への結合タンパク質の同定2016

    • Author(s)
      中山祐二、砂村直洋、大平崇人、押村光雄、久郷裕之
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2016-11-30
    • Related Report
      2016 Research-status Report
  • [Presentation] 染色体免疫沈降法による長鎖非コードRNA Xist関連分子群の同定2016

    • Author(s)
      稲岡大悟、砂村直洋、大平崇人、片岡美喜、押村光雄、中山祐二、久郷裕之
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2016-11-30
    • Related Report
      2016 Research-status Report
  • [Presentation] 大腸がんにおける長鎖ノンコーディングRNA KCNQ1OT1/LIT1の機能解明2016

    • Author(s)
      片岡美喜、砂村直洋、大平崇人、稲岡大悟、田辺秀之、押村光雄、中山祐二、久郷裕之
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2016-11-30
    • Related Report
      2016 Research-status Report
  • [Presentation] 微小管阻害剤の長期曝露によって倍数体化を伴って繰り返し起きる微小核誘導2016

    • Author(s)
      中山祐二、井上敏昭、押村光雄
    • Organizer
      第75回日本癌学会学術総会
    • Place of Presentation
      横浜
    • Year and Date
      2016-10-06
    • Related Report
      2016 Research-status Report
  • [Presentation] Biphasic production of immunoglobulin from Epstein-Barr virus reactivated PBMCs in Graves’ disease patients and controls2016

    • Author(s)
      Nagata K, Kumata K, Nakayama Y, Satoh Y, Matsushita M, Murakami I, Kuwamoto S, Kato M, Sugihara H, Hayashi K
    • Organizer
      XXXI International Congress of the International Academy of Pathology and 28th Congress of the European Society of Pathology
    • Place of Presentation
      Cologne, Germany
    • Year and Date
      2016-09-25
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] バセドウ病患者および健常者のPBMC (TRAb+EBV+)においてEBVの再活性化を誘導するとAIDの発現がおこる2016

    • Author(s)
      長田佳子、熊田圭祐、佐藤幸夫、中山祐二、松下倫子、村上一郎、桑本聡史、加藤雅子、杉原弘貢、林 一彦
    • Organizer
      第105回 日本病理学会総会
    • Place of Presentation
      仙台
    • Year and Date
      2016-05-12
    • Related Report
      2016 Research-status Report
  • [Presentation] An integrated Chromosomal omics approach to decipher molecular mechanism of CGG repeat expansion in Fragile X syndrome2016

    • Author(s)
      Yuji Nakayama, Naohiro Sunamura, Kaori Adachi, Akiko Kashiwagi, Daigo Inaoka, Mitsuo Oshimura, Hiroyuki Kugoh, Eiji Nanba
    • Organizer
      the 13th international congress of human genetics (ICHG)
    • Place of Presentation
      京都
    • Year and Date
      2016-04-04
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] A Collaborated Study of Fragile X syndrome and Fragile-X-Associated Tremor/ataxia Syndrome (FXTAS) for promoting clinical research in Japan2016

    • Author(s)
      Kaori Adachi, Tohru Matsuura, Kazuhiro Ishii, Yuji Nakayama, Yu-ichi Goto, Eiji Nanba
    • Organizer
      the 13th international congress of human genetics (ICHG)
    • Place of Presentation
      京都
    • Year and Date
      2016-04-04
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] beta-catenin controls the expression profiles of KCNQ1OT1/LIT1 long noncoding RNA2016

    • Author(s)
      Hiroyuki Kugoh, Takahito Ohira, Daigo Inaoka, Miki Kataoka, Hideyuki Tanabe, Mitsuo Oshimura, Yuji Nakayama, Naohiro Sunamura
    • Organizer
      the 13th international congress of human genetics (ICHG)
    • Place of Presentation
      京都
    • Year and Date
      2016-04-04
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Functional analysis of Xist long noncoding RNA using mouse artificial chromosome (MAC)2016

    • Author(s)
      Daigo Inaoka, Naohiro Sunamura, Miki Kataoka, Yuji Nakayama, Mitsuo Oshimura, Hiroyuki Kugoh
    • Organizer
      the 13th international congress of human genetics (ICHG)
    • Place of Presentation
      京都
    • Year and Date
      2016-04-04
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] バセドウ病患者および健常者のPBMC (TRAb+EBV+)においてEBVの再活性化を誘導するとAIDの発現を伴った免疫グロブリン産生がおこる2016

    • Author(s)
      長田佳子、熊田圭祐、佐藤幸夫、中山祐二、原小百合、松下倫子、村上一郎、桑本聡史、加藤雅子、杉原弘貢、林 一彦
    • Organizer
      第13回 EBV研究会
    • Place of Presentation
      東京
    • Related Report
      2016 Research-status Report
  • [Presentation] ミクロセル融合を介した染色体ベクター移入法の改良2015

    • Author(s)
      山本 加奈恵、楠瀬 未菜、中山 祐二、井上 敏昭、押村 光雄、加藤 基伸
    • Organizer
      第38回日本分子生物学会年会、第88回日本生化学会大会 合同大会
    • Place of Presentation
      神戸国際会議場
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
  • [Presentation] 微小管阻害剤存在下における倍数体化を伴って段階的に進む微小核誘導2015

    • Author(s)
      中山 祐二、宇野 愛海、宇野 勝洋、古本 真也、香月 康宏、難波 栄二、井上 敏昭、押村 光雄
    • Organizer
      第38回日本分子生物学会年会、第88回日本生化学会大会 合同大会
    • Place of Presentation
      神戸国際会議場
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
  • [Presentation] 脆弱X症候群ならびに脆弱X随伴振戦/失調症候群の治療推進に向けた臨床基盤 整備の研究2015

    • Author(s)
      難波栄二、松浦徹、石井一弘、中山祐二、足立香織、後藤雄一
    • Organizer
      日本人類遺伝学会 第60回大会
    • Place of Presentation
      東京 (京王プラザホテル)
    • Year and Date
      2015-10-14
    • Related Report
      2015 Research-status Report
  • [Presentation] Epstein-Barr virus reactivation stimulates the expression of activation-induced cytidine deaminase in PBMCs from Graves’ disease patients and healthy controls2015

    • Author(s)
      Keiko Nagata, Yuji Nakayama, Yukio Satoh, Keisuke Kumata, Michiko Matsushita, Shunsuke Tanio, Ichiro Murakami, Satoshi Kuwamoto, Masako Kato, Hirotsugu Sugihara, Kazuhiko Hayashi
    • Organizer
      27th European Congress of Pathology
    • Place of Presentation
      Belgrade(セルビア)
    • Year and Date
      2015-09-05
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Epstein-Barr virus reactivation stimulates the expression of activation-induced cytidine deaminase in PBMCs from Graves’ disease patients and healthy controls2015

    • Author(s)
      Keiko Nagata, Yukio Satoh, Yuji Nakayama, Keisuke Kumata, Michiko Matsushita, Shunsuke Tanio, Ichiro Murakami, Satoshi Kuwamoto, Masako Kato, Hirotsugu Sugihara, Kazuhiko Hayashi
    • Organizer
      第12回 EBV研究会
    • Place of Presentation
      出雲市 ビックハート
    • Year and Date
      2015-07-20
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] バセドウ病患者および健常者の培養末梢血単核球にEBV再活性化誘導を行うとTSHレセプター抗体の産生がおこる2015

    • Author(s)
      長田佳子、中山祐二、檜垣克美、熊田圭祐、松下倫子、村上一郎、加藤雅子、桑本聡史、木村 宏、林 一彦
    • Organizer
      第104回日本病理学会
    • Place of Presentation
      名古屋国際会議場
    • Year and Date
      2015-04-30
    • Related Report
      2015 Research-status Report

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Published: 2015-04-16   Modified: 2019-03-29  

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