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Development of genome editing technology with low off-target risk and high efficiency in human pluripotent stem cells

Research Project

Project/Area Number 15K06924
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field System genome science
Research InstitutionKeio University

Principal Investigator

SONE Takefumi  慶應義塾大学, 医学部(信濃町), 訪問研究員 (00379091)

Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2017: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2016: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2015: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywordsゲノム編集 / iPS細胞 / CRISPR / ノックイン / TALEN / 遺伝子治療 / 相同組換え / 疾患研究 / ウイルスベクター
Outline of Final Research Achievements

Genome editing technology has made it familiar for us to knock-out a gene, but it is still difficult to knock-in a certain DNA sequence precisely into a genomic locus. In this study, a simple and effective method was developed to construct a gene knock-in vector with a drug-resistant gene cassette. Using the vector in combination with TALEN of CRISPR expression vectors, responsible genes of iPSC lines derived from various disease patients were successfully corrected or those of control iPSC lines were modified to have mutation. Especially for CRISPR expression vector, an all-in-one construct was developed to express two sets of sgRNAs for two dual-nickase Cas9 pairs to cut two genomic loci at the same time for lower the risk of off-target effect. Combination of this vector with two knock-in vectors with two different drug-resistant gene cassette, a reliable homo knock-in system was also developed and confirmed for its feasibility.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (30 results)

All 2018 2017 2016 2015 Other

All Int'l Joint Research (1 results) Journal Article (7 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 6 results,  Open Access: 6 results,  Acknowledgement Compliant: 1 results) Presentation (19 results) (of which Int'l Joint Research: 7 results,  Invited: 1 results) Remarks (3 results)

  • [Int'l Joint Research] Johns Hopkins University(米国)

    • Related Report
      2017 Annual Research Report
  • [Journal Article] Generation of D1-1 TALEN isogenic control cell line from Dravet syndrome patient iPSCs using TALEN-mediated editing of the SCN1A gene2018

    • Author(s)
      Tanaka Yasuyoshi、Sone Takefumi、Higurashi Norimichi、Sakuma Tetsushi、Suzuki Sadafumi、Ishikawa Mitsuru、Yamamoto Takashi、Mitsui Jun、Tsuji Hitomi、Okano Hideyuki、Hirose Shinichi
    • Journal Title

      Stem Cell Research

      Volume: 28 Pages: 100-104

    • DOI

      10.1016/j.scr.2018.01.036

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Down-regulation of ghrelin receptors on dopaminergic neurons in the substantia nigra contributes to Parkinson's disease-like motor dysfunction.2018

    • Author(s)
      Suda Y, Kuzumaki N, Sone T, Narita M, Tanaka K, Hamada Y, Iwasawa C, Shibasaki M, Maekawa A, Matsuo M, Akamatsu W, Hattori N, Okano H, Narita M.
    • Journal Title

      Mol Brain.

      Volume: 11 Issue: 1 Pages: 6-6

    • DOI

      10.1186/s13041-018-0349-8

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Efficient induction of dopaminergic neuron differentiation from induced pluripotent stem cells reveals impaired mitophagy in PARK2 neurons.2017

    • Author(s)
      Suzuki S, Akamatsu W, Kisa F, Sone T, Ishikawa KI, Kuzumaki N, Katayama H, Miyawaki A, Hattori N, Okano H.
    • Journal Title

      Biochem Biophys Res Commun.

      Volume: 489 Issue: 1 Pages: 88-93

    • DOI

      10.1016/j.bbrc.2016.12.188

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cochlear Cell Modeling Using Disease-Specific iPSCs Unveils a Degenerative Phenotype and Suggests Treatments for Congenital Progressive Hearing Loss2017

    • Author(s)
      Makoto Hosoya, Masato Fujioka, Takefumi Sone, Satoshi Okamoto, Wado Akamatsu, Hideki Ukai, Hiroki R. Ueda, Kaoru Ogawa, Tatsuo Matsunaga, Hideyuki Okano
    • Journal Title

      Cell Reports

      Volume: 18 Issue: 1 Pages: 68-81

    • DOI

      10.1016/j.celrep.2016.12.020

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] 2. iPS細胞技術とゲノム編集技術を駆使した筋萎縮性側索硬化症病態モデルの創成と治療への展望2016

    • Author(s)
      曽根岳史、一柳直希、藤森康希、岡野栄之
    • Journal Title

      実験医学(増刊)

      Volume: 34 Pages: 146-157

    • Related Report
      2016 Research-status Report
  • [Journal Article] Establishment of in vitro FUS-associated familial amyotrophic lateral sclerosis model using human induced pluripotent stem cells.2016

    • Author(s)
      Naoki Ichiyanagi, Koki Fujimori, Masato Yano, Chikako Ishihara-Fujisaki, Takefumi Sone, Tetsuya Akiyama, Yohei Okada, Wado Akamatsu, Takuya Matsumoto, Mitsuru Ishikawa, Yoshinori Nishimoto, Yasuharu Ishihara, Tetsushi Sakuma, Takashi Yamamoto, Hitomi Tsuiji, Naoki Suzuki, Hitoshi Warita, Masashi Aoki, Hideyuki Okano
    • Journal Title

      Stem Cell Reports

      Volume: 6 Issue: 4 Pages: 496-510

    • DOI

      10.1016/j.stemcr.2016.02.011

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Controlling the regional identity of hPSC-derived neurons to uncover neuronal subtype specificity of neurological disease phenotypes.2015

    • Author(s)
      Kent Imaizumi, Takefumi Sone, Keiji Ibata, Koki Fujimori, Michisuke Yuzaki, Wado Akamatsu, Hideyuki Okano
    • Journal Title

      Stem Cell Reports

      Volume: 5 Issue: 6 Pages: 1010-1022

    • DOI

      10.1016/j.stemcr.2015.10.005

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] iPS細胞におけるAngelman症候群原因遺伝子UBE3Aノックアウトの作製と神経細胞の表現型探索2017

    • Author(s)
      大河内 遼太郎, 曽根 岳史, 石川 充, 奥野 博庸, 中武 悠樹, 洪 実, 小崎 健次郎, 岡野 栄之
    • Organizer
      第16回日本再生医療学会総会
    • Place of Presentation
      仙台国際センター, 仙台
    • Year and Date
      2017-03-07
    • Related Report
      2016 Research-status Report
  • [Presentation] 遺伝性パーキンソン病患者由来iPS細胞におけるゲノム編集iPS細胞の樹立2017

    • Author(s)
      太田 悦朗, 曽根 岳史, 大日方 友理, 鵜飼 英樹, 久松 知子, 北川 季子, 石川 充, 駒野 肇, 上田泰己, 小幡 文弥, 岡野 栄之
    • Organizer
      第16回日本再生医療学会総会
    • Place of Presentation
      仙台国際センター, 仙台
    • Year and Date
      2017-03-07
    • Related Report
      2016 Research-status Report
  • [Presentation] Functional analysis of synaptic gene expression and morphologies in Angelman syndrome patient-derived neurons2017

    • Author(s)
      Mitsuru Ishikawa, Ryotaro Okochi, Hironobu Okuno, Shoma Tanaka, Takefumi Sone
    • Organizer
      CDB Symposium 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Generation of gene-corrected iPSC from patient-derived iPSC with familial Parkinson's disease2017

    • Author(s)
      Etsuro Ohta, Takefumi Sone, Yuri Obinata, Hideki Ukai, Tomoko Hisamatsu, Tokiko Kitagawa, Mitsuru Ishikawa, Hajime Komano, Hiroki R. Ueda, Fumiya Obata, Hideyuki Okano
    • Organizer
      ISSCR 2017 Annual Meeting
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Multisite Gatewayクローニング技術に立脚した汎用ヒトiPS細胞ゲノム編集ツールボックス2017

    • Author(s)
      曽根 岳史, 吉松 祥, 塩澤 誠司, 大河内 遼太郎, 石川 充, 木下 実結, 藤森 康希, 川嶋 志保子, 大多 茂樹, 鐘ヶ江 裕美, 三好 浩之, 岡野 栄之
    • Organizer
      日本ゲノム編集学会第2回大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Pathophysiological analysis of skeletal muscles in spinal bulbar muscular atrophy (SBMA) by genome editing of CAG repeats.2017

    • Author(s)
      Satoshi Tanaka, Takuji Ito, Akinobu Ota, Takefumi Sone, Daisuke Shimojo, Shiro Imagama, Yoshitaka Hosokawa, Manabu Doyu, Hideyuki Okano, Yohei Okada
    • Organizer
      Neuroscience 2017 (SfN’s 47th Annual Meeting)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ゲノム編集によるポリグルタミン病の病態解析と治療開発の可能性2016

    • Author(s)
      田中 智史, 伊藤 卓治, 太田 明伸, 曽根 岳史, 下門 大祐, 小野寺 一成, 今釜 史郎, 細川 好孝, 道勇 学, 勝野 雅央, 祖父江 元, 岡野 栄之, 岡田 洋平
    • Organizer
      第39回分子生物学会年会
    • Place of Presentation
      パシフィコ横浜, 横浜
    • Year and Date
      2016-11-30
    • Related Report
      2016 Research-status Report
  • [Presentation] mt-Keimaを用いたパーキンソン病iPS細胞におけるマイトファジー解析システムの構築2016

    • Author(s)
      鈴木 禎史*, 赤松 和土, 木佐 文彦, 曽根 岳史, 石川 景一, 服部 信孝, 岡野 栄之
    • Organizer
      第38回日本生物学的精神医学会・第59回日本神経化学会大会合同年会
    • Place of Presentation
      福岡国際会議場, 福岡
    • Year and Date
      2016-09-08
    • Related Report
      2016 Research-status Report
  • [Presentation] ゲノム編集による筋委縮性側索硬化症(ALS)の病態モデル細胞の創成と遺伝子治療2016

    • Author(s)
      曽根 岳史*, 一柳 直希, 藤森 康希, 岡野 栄之
    • Organizer
      日本ゲノム編集学会第1回大会
    • Place of Presentation
      広島国際会議場, 広島
    • Year and Date
      2016-09-06
    • Related Report
      2016 Research-status Report
  • [Presentation] ゲノム編集によるポリグルタミン病の病態解析と治療開発の可能性2016

    • Author(s)
      田中 智史, 伊藤 卓治, 太田 明伸, 曽根 岳史, 今釜 史郎, 細川 好孝, 道勇 学, 岡野 栄之, 岡田 洋平
    • Organizer
      日本ゲノム編集学会第1回大会
    • Place of Presentation
      広島国際会議場, 広島
    • Year and Date
      2016-09-06
    • Related Report
      2016 Research-status Report
  • [Presentation] 遺伝性パーキンソン病患者由来iPS細胞におけるゲノム編集iPS細胞の樹立2016

    • Author(s)
      大日方 友理*, 太田 悦朗, 曽根 岳史, 鵜飼 英樹, 久松 知子, 石川 充, 駒野 肇, 上田 泰己, 小幡 文弥, 岡野 栄之
    • Organizer
      第11回日本臨床検査教育学会学術大会
    • Place of Presentation
      神戸常盤大学・神戸国際展示場, 神戸
    • Year and Date
      2016-08-31
    • Related Report
      2016 Research-status Report
  • [Presentation] 遺伝性パーキンソン病患者由来iPS細胞のゲノム編集および病態解析2016

    • Author(s)
      太田 悦朗*, 曽根 岳史, 大日方 友理, 鵜飼 英樹, 久松 知子, 北川 季子, 石川 充, 駒野 肇, 上田 泰己, 小幡 文弥, 岡野 栄之
    • Organizer
      第39回日本神経科学大会
    • Place of Presentation
      パシフィコ横浜, 横浜
    • Year and Date
      2016-07-20
    • Related Report
      2016 Research-status Report
  • [Presentation] Establishment of in vitro FUS-associated familial amyotrophic lateral sclerosis model using human induced pluripotent stem cells2016

    • Author(s)
      Naoki Ichiyanagi*, Koki Fujimori, Masato Yano, Chikako Ishihara-Fujisaki, Takefumi Sone, Tetsuya Akiyama, Yohei Okada, Wado Akamatsu, Takuya Matsumoto, Mitsuru Ishikawa, Yoshinori Nishimoto, Yasuharu Ishihara, Tetsushi Sakuma, Takashi Yamamoto, Hitomi Tsuiji, Naoki Suzuki, Hitoshi Warita, Masashi Aoki, Hideyuki Okano
    • Organizer
      ISSCR 2016 Annual Meeting
    • Place of Presentation
      San Francisco, CA
    • Year and Date
      2016-06-22
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Generation of specific neuronal subtypes from human pluripotent stem cells2016

    • Author(s)
      Kent Imaizumi*, Takefumi Sone, Wado Akamatsu, Hideyuki Okano
    • Organizer
      ISSCR 2016 Annual Meeting
    • Place of Presentation
      San Francisco, CA
    • Year and Date
      2016-06-22
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] ゲノム編集した患者由来疾患iPS細胞の全ゲノム解析によって明らかになったこと2015

    • Author(s)
      曽根 岳史*、朴 聖俊、田中 泰圭、太田 悦朗、日暮 憲道、中井 謙太、廣瀬 伸一、岡野 栄之
    • Organizer
      BMB2015 (第38回日本分子生物学会年会、第88回日本生化学会大会 合同大会)
    • Place of Presentation
      神戸ポートアイランド (兵庫県神戸市)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] TALEN-mediated genome editing of patient-derived iPSCs for disease model studies.2015

    • Author(s)
      Takefumi Sone*, Yasuyoshi Tanaka, Etsuro Ohta, Makoto Hosoya、Naoki Ichiyanagi, Tetsuya Akiyama, Norimichi Higurashi, Shinichi Hirose, Hideyuki Okano
    • Organizer
      TGE2015: Conference on Transposition and Genome Engineering 2015
    • Place of Presentation
      奈良春日野国際フォーラム 甍~I・RA・KA~ (奈良県奈良市)
    • Year and Date
      2015-11-17
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] A mutated PENDRIN formed intracellular aggregations in the inner ear cells induced from Pendred syndrome patients-specific iPS cells.2015

    • Author(s)
      細谷 誠*, 藤岡 正人, 渡部 孝太郎, 岡本 理志, 曽根 岳史, 松永 達雄, 赤松 和土, 小川 郁, 岡野 栄之
    • Organizer
      第38回日本神経科学大会
    • Place of Presentation
      神戸国際会議場・神戸国際展示場 (兵庫県神戸市)
    • Year and Date
      2015-07-28
    • Related Report
      2015 Research-status Report
  • [Presentation] PENDRED症候群疾患特異的iPS細胞由来内耳細胞を用いた薬剤スクリーニング2015

    • Author(s)
      細谷 誠*, 藤岡 正人, 岡本 理志, 曽根 岳史, 松永 達雄, 赤松 和土, 小川 郁, 岡野 栄之
    • Organizer
      第36回日本炎症・再生医学会
    • Place of Presentation
      虎ノ門ヒルズフォーラム (東京都港区)
    • Year and Date
      2015-07-21
    • Related Report
      2015 Research-status Report
  • [Presentation] Genome editing of SCN1A in induced pluripotent stem cells to study the pathomechanisms of Dravet syndrome.2015

    • Author(s)
      Yasuyoshi Tanaka*, Taku Uchida, Takefumi Sone, Norimichi Higurashi, Mitsuru Ishikawa, Hideyuki Okano, Shinichi Hirose
    • Organizer
      The 13th Asian and Oceanian Congress of Child Neurology
    • Place of Presentation
      台北 (台湾)
    • Year and Date
      2015-05-14
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Remarks] ドラベ症候群iPS細胞モデルを用いた創薬ハイスループットスクリーニングシステムの確立に向けた基盤研究

    • URL

      https://fukuoka-u.repo.nii.ac.jp/?action=repository_uri&item_id=3996&file_id=22&file_no=1

    • Related Report
      2017 Annual Research Report
  • [Remarks] iPS 細胞を用いて「内耳変性」という難聴の新たな原因と、 その治療薬候補物質を発見

    • URL

      https://www.keio.ac.jp/ja/press-releases/files/2017/1/11/170111-1.pdf

    • Related Report
      2016 Research-status Report
  • [Remarks] iPS 細胞とゲノム編集技術を用いて 筋萎縮性側索硬化症(ALS)の病態モデルを構築

    • URL

      http://www.keio.ac.jp/ja/press_release/2015/osa3qr000001g2lb-att/20160318_01.pdf

    • Related Report
      2015 Research-status Report

URL: 

Published: 2015-04-16   Modified: 2019-03-29  

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