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Spatiotemporal fine tuning of mRNA stability and translation by RNA-binding proteins

Research Project

Project/Area Number 15K06944
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Molecular biology
Research InstitutionUniversity of Tsukuba

Principal Investigator

IRIE KENJI  筑波大学, 医学医療系, 教授 (90232628)

Co-Investigator(Renkei-kenkyūsha) SUDA YASUYUKI  筑波大学, 医学医療系, 助教 (10553844)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2017: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2016: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2015: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
KeywordsRNA / 出芽酵母 / ポリA分解酵素 / 細胞壁 / RNA結合タンパク質 / ポリA分解酵素 / 細胞壁合成 / 低分子量Gタンパク質 / ポリA鎖 / mRNA / RNA分解 / polyA鎖
Outline of Final Research Achievements

Ccr4 is a major cytoplasmic deadenylase involved in mRNA poly(A) tail shortening in Saccharomyces cerevisiae. In the log-phase ccr4 mutant cells, LRG1 poly(A) tail was longer and LRG1 mRNA level was higher than those in the log-phase wild-type (WT) cells. Unexpectedly, Lrg1 protein level in the ccr4 mutant cells was comparable with that in WT. In the stationary-phase ccr4 mutant cells, LRG1 poly(A) tail length was still longer and LRG1 mRNA level was still higher than those in WT cells. In contrast to the log phase, Lrg1 protein level in the stationary-phase ccr4 mutant cells was maintained much higher than that in the stationary-phase WT cells. Loss of PBP1 reduced the LRG1 poly(A) tail length as well as LRG1 mRNA and protein levels in the stationary-phase ccr4 mutant cells. Our results suggest that Ccr4 regulates not only LRG1 mRNA level through poly(A) shortening but also the translation of LRG1 mRNA, and that Pbp1 is involved in the Ccr4-mediated regulation.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (13 results)

All 2017 2016 2015 Other

All Int'l Joint Research (1 results) Journal Article (8 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 8 results,  Open Access: 7 results,  Acknowledgement Compliant: 1 results) Presentation (3 results) Remarks (1 results)

  • [Int'l Joint Research] National Taiwan University(Taiwan)

    • Related Report
      2015 Research-status Report
  • [Journal Article] Expression control of the AMPK regulatory subunit and its functional significance in yeast ER stress response.2017

    • Author(s)
      Kimura Y, Irie K, Mizuno T.
    • Journal Title

      Sci Rep.

      Volume: 7 Issue: 1 Pages: 46713-46713

    • DOI

      10.1038/srep46713

    • NAID

      120007129143

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Activation of Rab GTPase Sec4 by its GEF Sec2 is required for prospore membrane formation during sporulation in yeast Saccharomyces cerevisiae2017

    • Author(s)
      Suda Yasuyuki、Tachikawa Hiroyuki、Inoue Ichiro、Kurita Tomokazu、Saito Chieko、Kurokawa Kazuo、Nakano Akihiko、Irie Kenji
    • Journal Title

      FEMS Yeast Res.

      Volume: 18 Issue: 1 Pages: 1-1

    • DOI

      10.1093/femsyr/fox095

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cytoplasmic deadenylase Ccr4 is required for translational repression of LRG1 mRNA in the stationary phase.2017

    • Author(s)
      Duy DL, Suda Y, Irie K
    • Journal Title

      PLoS One

      Volume: 12 Issue: 2 Pages: e0172476-e0172476

    • DOI

      10.1371/journal.pone.0172476

    • NAID

      120007134993

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Different Regulations of ROM2 and LRG1 Expression by Ccr4, Pop2, and Dhh1 in the Saccharomyces cerevisiae Cell Wall Integrity Pathway.2016

    • Author(s)
      Li X, Ohmori T, Irie K, Kimura Y, Suda Y, Mizuno T, Irie K.
    • Journal Title

      mSphere

      Volume: 1 Issue: 5

    • DOI

      10.1128/msphere.00250-16

    • NAID

      120007135047

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Analysis of the physiological activities of Scd6 through its interaction with Hmt1.2016

    • Author(s)
      Lien PT, Izumikawa K, Muroi K, Irie K, Suda Y, Irie K
    • Journal Title

      PLoS One

      Volume: 11 Issue: 10 Pages: e0164773-e0164773

    • DOI

      10.1371/journal.pone.0164773

    • NAID

      120007135265

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Enhancement of protein production via the strong DIT1 terminator and two RNA-binding proteins in Saccharomyces cerevisiae.2016

    • Author(s)
      Y. Ito, T. Kitagawa, M. Yamanashi, S. Katahira, S. Izawa, K. Irie, M. Furutani-Seiki, and T. Matsuyama
    • Journal Title

      Sci. Rep.

      Volume: 6 Issue: 1 Pages: 36997-36997

    • DOI

      10.1038/srep36997

    • NAID

      120007129256

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] The Saccharomyces cerevisiae AMPK, Snf1, Negatively Regulates the Hog1 MAPK Pathway in ER Stress Response.2015

    • Author(s)
      Mizuno T, Masuda Y, Irie K
    • Journal Title

      PLOS Genetics

      Volume: 11 Issue: 9 Pages: e1005491-e1005491

    • DOI

      10.1371/journal.pgen.1005491

    • NAID

      120007136050

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Evaluation of an Epitypified Ophiocordyceps formosana (Cordyceps s.l.) for Its Pharmacological Potential.2015

    • Author(s)
      Wang YW, Hong TW, Tai YL, Wang YJ, Tsai SH, Lien PT, Chou TH, Lai JY, Chu R, Ding ST, Irie K, Li TK, Tzean SS, Shen TL.
    • Journal Title

      Evidence-Based Complementary and Alternative Medicine

      Volume: 2015 Pages: 189891-189891

    • DOI

      10.1155/2015/189891

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] Cytoplasmic deadenylase Ccr4 is required for translational repression of LRG1 mRNA in the stationary phase2017

    • Author(s)
      入江賢児
    • Organizer
      第19回日本RNA学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Analysis of Scd6 physiological activity through its interaction with Hmt12015

    • Author(s)
      Pham Thi Kim Lien, Kei Muroi, Yasuyuki Suda, Kenji Irie
    • Organizer
      酵母遺伝学フォーラム第48回研究報告会
    • Place of Presentation
      広島大学(東広島キャンパス)
    • Year and Date
      2015-08-31
    • Related Report
      2015 Research-status Report
  • [Presentation] Analysis of Scd6 physiological activity through its interaction with Hmt1 and Rps28a2015

    • Author(s)
      Pham Thi Kim Lien, Kei Muroi, Yasuyuki Suda, Kenji Irie
    • Organizer
      第67回日本細胞生物学会大会
    • Place of Presentation
      タワーホール船堀(東京)
    • Year and Date
      2015-06-30
    • Related Report
      2015 Research-status Report
  • [Remarks] 筑波大学医学医療系分子細胞生物学グループ

    • URL

      http://www.md.tsukuba.ac.jp/public/basic-med/molcellbiol/index.html

    • Related Report
      2015 Research-status Report

URL: 

Published: 2015-04-16   Modified: 2022-02-28  

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