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Elucidation of piRNA biogenesis in silkworm germ line BmN4 cells

Research Project

Project/Area Number 15K06948
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Molecular biology
Research InstitutionThe University of Tokyo

Principal Investigator

Nishida Kazumichi  東京大学, 大学院理学系研究科(理学部), 特任助教 (10598436)

Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2017: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2016: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2015: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
KeywordspiRNA / PIWIタンパク質 / Papi / Zucchini / ミトコンドリア / 生殖細胞 / piRNA生合成
Outline of Final Research Achievements

piRNAs bind PIWI proteins to control transposons to maintain germline genome integrity. piRNA intermediates are bound with PIWI anchored onto mitochondrial PAPI. However, whether Zucchini (Zuc) endonuclease, which play pivotal roles in Drosophila piRNA biogenesis, are required for this remains elusive.
We show that loss of Zuc in Bombyx aberrantly accumulated piRNA intermediates within the PAPI complex. PAPI exerted its RNA-binding activity only when being bound with PIWI and phosphorylated, suggesting a hierarchical process of the complex assembly. Both 5′ and 3′ ends of piRNA intermediates showed the hallmark of PIWI-Slicer. The 5′ end of Bombyx piRNA is formed by PIWI-Slicer, while the 3′ end is formed by Zuc endonuclease. The Bombyx piRNA biogenesis is simpler than that of Drosophila, because Bombyx has no phased piRNAs.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (4 results)

All 2018 2016 2015 Other

All Journal Article (2 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 2 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (1 results) Remarks (1 results)

  • [Journal Article] Hierarchical roles of mitochondrial Papi and Zucchini in Bombyx germline piRNA biogenesis2018

    • Author(s)
      Nishida Kazumichi M.、Sakakibara Kazuhiro、Iwasaki Yuka W.、Yamada Hiromi、Murakami Ryo、Murota Yukiko、Kawamura Takeshi、Kodama Tatsuhiko、Siomi Haruhiko、Siomi Mikiko C.
    • Journal Title

      Nature

      Volume: 555 Issue: 7695 Pages: 260-264

    • DOI

      10.1038/nature25788

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Crystal structure of silkworm PIWI-clade Argonaute Siwi bound to piRNA2016

    • Author(s)
      Matsumoto N, Nishimasu H, Sakakibara K, Nishida KM, Hirano T, Ishitani R, Siomi H, Siomi MC, Nureki O
    • Journal Title

      Cell

      Volume: 167 Issue: 2 Pages: 484-497

    • DOI

      10.1016/j.cell.2016.09.002

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] Functional involvement of BmZuc in the silkworm piRNA biogenesis2015

    • Author(s)
      Kazumichi Nishida
    • Organizer
      日本RNA学会
    • Place of Presentation
      ホテルライフォート札幌(札幌)
    • Year and Date
      2015-07-15
    • Related Report
      2015 Research-status Report
  • [Remarks] 生殖細胞を守る小さなRNAの生合成の仕組みを解明

    • URL

      https://www.s.u-tokyo.ac.jp/ja/press/2018/5783/

    • Related Report
      2017 Annual Research Report

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Published: 2015-04-16   Modified: 2019-03-29  

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