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Development of new NMR method for studying structural dynamics of large molecular proteins

Research Project

Project/Area Number 15K06966
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionOsaka University (2017)
Nagoya University (2015-2016)

Principal Investigator

Miyanoiri Yohei  大阪大学, たんぱく質研究所, 准教授 (80547521)

Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2015: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
KeywordsNMR / 蛋白質動態 / 安定同位体標識 / 高分子量蛋白質 / 圧力可変実験 / 高分子量蛋白質複合体 / 蛋白質 / 動態 / NMR
Outline of Final Research Achievements

We developed new relaxation optimized SAIL amino acids for studying structural dynamics of large molecular proteins. Moreover, we also developed cost effective E. coli cellular expression systems, using auxotrophic mutants lacking certain enzymes in the biosynthetic pathways of various amino acids. From these results, we could successfully apply them to the 82 kDa MSG and about 1 MDa GroEL-GroES to observe the 13CH side chain moieties. By using high-pressure NMR experiments, we clearly detected structural fluctuations in core domain of MSG which could not be observed in conventional NMR experiments.
Unfortunately, we could not do the quantitative analysis for structural dynamics of MSG and GroEL-GroES due to the lower sensitivity of exchange signals. We will continue to improve and develop the SAIL-NMR methods to solve these problems.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (22 results)

All 2018 2017 2016 2015 Other

All Int'l Joint Research (1 results) Journal Article (7 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 7 results,  Open Access: 6 results,  Acknowledgement Compliant: 2 results) Presentation (11 results) (of which Int'l Joint Research: 5 results,  Invited: 5 results) Book (1 results) Remarks (2 results)

  • [Int'l Joint Research] Harvard Medical School(米国)

    • Related Report
      2017 Annual Research Report
  • [Journal Article] Biochemical characterization of the flagellar stator-associated inner membrane protein FliL from Vibrio alginolyticus2017

    • Author(s)
      Kumar A, Isumi M, Sakuma M, Zhu S, Nishino Y, Onoue Y, Kojima S, Miyanoiri Y, Imada K, Homma M.
    • Journal Title

      J Biochem.

      Volume: 161 Pages: 331-337

    • DOI

      10.1093/jb/mvw076

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structural and Functional Analysis of the C-Terminal Region of FliG, an Essential Motor Component of Vibrio Na + -Driven Flagella2017

    • Author(s)
      Miyanoiri Yohei、Hijikata Atsushi、Nishino Yuuki、Gohara Mizuki、Onoue Yasuhiro、Kojima Seiji、Kojima Chojiro、Shirai Tsuyoshi、Kainosho Masatsune、Homma Michio
    • Journal Title

      Structure

      Volume: 25 Issue: 10 Pages: 1540-1548

    • DOI

      10.1016/j.str.2017.08.010

    • NAID

      120006375873

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Stable-Isotope Aided NMR Spectroscopy2017

    • Author(s)
      Yohei Miyanoiri, Mitsuhiro Takeda, Masatsune Kainosho
    • Journal Title

      Modern Magnetic Resonance

      Volume: 印刷中 Pages: 1-18

    • DOI

      10.1007/978-3-319-28275-6_48-1

    • ISBN
      9783319282756
    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] 高分子量タンパク質の動態に迫るNMR技術の開発2016

    • Author(s)
      宮ノ入洋平、武田光広、甲斐荘正恒
    • Journal Title

      生化学

      Volume: 88 Pages: 452-464

    • NAID

      40020948070

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Highly efficient residue-selective labeling with isotope-labeled Ile, Leu, and Val using a new auxotrophic E. coli strain2016

    • Author(s)
      Miyanoiri Y, Ishida Y, Takeda M, Terauchi T, Inouye M, Kainosho M
    • Journal Title

      J Biomol NMR

      Volume: 65 Issue: 2 Pages: 109-119

    • DOI

      10.1007/s10858-016-0042-0

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] 13C-NMR studies on disulfide bond isomerization in bovine pancreatic trypsin inhibitor (BPTI)2016

    • Author(s)
      Takeda M, Miyanoiri Y, Terauchi T, Kainosho M
    • Journal Title

      J Biomol NMR

      Volume: 66 Issue: 1 Pages: 37-53

    • DOI

      10.1007/s10858-016-0055-8

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] 立体選択的13CH3標識Leu, Valの高分子量蛋白質のNMR研究への応用2016

    • Author(s)
      宮ノ入洋平、武田光広、寺内勉、甲斐荘正恒
    • Journal Title

      分光研究

      Volume: 65 Pages: 46-49

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Presentation] Relaxation Optimized SAIL-NMR method for studying structures and dynamics of protein complexes2018

    • Author(s)
      Yohei Miyanoiri
    • Organizer
      Frontiers of Multiscale Structural Biology: Order-disorder transitions and dynamic membrane interactions
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Relaxation Optimization using isotope labeling for studying larger proteins by NMR2018

    • Author(s)
      Yohei Miyanoiri
    • Organizer
      Symposium on Structure and Folding of Disease Related Proteins
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Relaxation Optimization using isotope labeling for studying larger proteins by NMR2017

    • Author(s)
      Yohei Miyanoiri
    • Organizer
      The 56th annual meeting of NMR Society of Japan
    • Related Report
      2017 Annual Research Report
  • [Presentation] NMRで観る:高度な安定同位体標識技術を利用した高分子量蛋白質の動態構造解析法2017

    • Author(s)
      宮ノ入洋平
    • Organizer
      第21回 VBLシンポジウム
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 大阪大学蛋白質研究所におけるNMR共用プラットフォームの運用とSAIL-NMR法の新たな展開2017

    • Author(s)
      宮ノ入洋平
    • Organizer
      日本分光学会NMR分光部会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Relaxation-optimized SAIL NMR for structural studies of large proteins2017

    • Author(s)
      Yohei Miyanoiri
    • Organizer
      2nd Molecular, Cellular, and Life Sciences 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Relaxation-optimized SAIL method for structural studies of large proteins2016

    • Author(s)
      Yohei Miyanoiri, Mitsuhiro Takeda, Tsutomu Terauchi, Masatsune Kainosho
    • Organizer
      第55回NMR討論会
    • Place of Presentation
      広島国際会議場
    • Year and Date
      2016-11-16
    • Related Report
      2016 Research-status Report
  • [Presentation] Structural studies of larger proteins using relaxation optimized SAIL amino acids2016

    • Author(s)
      Yohei Miyanoiri, Mitsuhiro Takeda, Tsutomu Terauchi, Masatsune Kainosho
    • Organizer
      The 42nd Naito Conference. In the Vanguard of Structural Biology: Revolutionizing Life Sciences
    • Place of Presentation
      シャトレーゼ ガトーキングダム サッポロ
    • Year and Date
      2016-10-04
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Structural Studies of Larger Proteins Using Relaxation Optimized SAIL Amino Acids2016

    • Author(s)
      Yohei Miyanoiri, Mitsuhiro Takeda, Tsutomu Terauchi, Yojiro Ishida, Masayori Inouye, Masatsune Kainosho
    • Organizer
      XXVIIth ICMRBS 2016
    • Place of Presentation
      京都国際会議場
    • Year and Date
      2016-08-21
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] 高度な安定同位体標識技術を利用した新しい溶液NMR法の開発2016

    • Author(s)
      宮ノ入洋平、武田光広、楊淳竣、寺内勉、甲斐荘正恒
    • Organizer
      日本生物物理学会中部支部講演会
    • Place of Presentation
      岡崎コンファレンスセンター
    • Year and Date
      2016-02-29
    • Related Report
      2015 Research-status Report
  • [Presentation] 核緩和最適化SAILアミノ酸を利用した高分子量蛋白質複合体の溶液立体構造解析法の開発2015

    • Author(s)
      宮ノ入洋平、武田光広、寺内勉、甲斐荘正恒
    • Organizer
      第54回NMR討論会
    • Place of Presentation
      千葉工業大学
    • Year and Date
      2015-11-06
    • Related Report
      2015 Research-status Report
  • [Book] Experimental Approaches of NMR Spectroscopy; Isotope-Aided Methods for Biological NMR Spectroscopy: Past, Present, and Future2017

    • Author(s)
      Kainosho Masatsune、Miyanoiri Yohei、Takeda Mitsuhiro
    • Total Pages
      636
    • Publisher
      Springer
    • Related Report
      2017 Annual Research Report
  • [Remarks] 大阪大学 蛋白質研究所 先端計測研究室

    • URL

      http://www.protein.osaka-u.ac.jp/rcsfp/apc/nmr/

    • Related Report
      2017 Annual Research Report
  • [Remarks] 名古屋大学大学院理学研究科附属構造生物学研究センター

    • URL

      http://bunshi4.bio.nagoya-u.ac.jp/~structure/index.html

    • Related Report
      2016 Research-status Report

URL: 

Published: 2015-04-16   Modified: 2022-06-06  

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