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Thermodynamic analysis of pressure- and temperature-dependent structural changes of amyloid fibril and its oligomeric intermediates

Research Project

Project/Area Number 15K07038
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Biophysics
Research InstitutionKindai University

Principal Investigator

Sakurai Kazumasa  近畿大学, 先端技術総合研究所, 准教授 (10403015)

Co-Investigator(Kenkyū-buntansha) 李 映昊  大阪大学, たんぱく質研究所, 講師 (70589431)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2017: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2016: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2015: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywordsアミロイド線維 / フォールディング / 凝集中間体 / 高圧NMR / 温度圧力依存性 / 温度圧力変性
Outline of Final Research Achievements

Amyloid fibrils are insoluble proteinaceous aggregates, related with several diseases. During their formation reactions, oligomeric intermediates were known to appear. Knowledge of thermodynamics of such intermediate states are relevant to understanding the mechanism of fibrillogenesis. We planned to control the population of the fibril and intermediate states by adjusting the pressure and temperature conditions, then spectroscopically characterize the targeted states. Unfortunately, since irreversibility of fibrillogenesis was confirmed, ideal thermodynamic analysis was considered to be inappropriate. Therefore, we focused our efforts on finding the conditions where the intermediate states will dominantly populate and characterizations of structural properties of such states. According to this aim, we investigated condition-dependent structural changes of β2m、αSyn、Aβ and discussed the contributions of these intermediate state to the fibrillogenesis based on the obtained results.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (32 results)

All 2018 2017 2016 2015 Other

All Journal Article (8 results) (of which Int'l Joint Research: 6 results,  Peer Reviewed: 8 results,  Open Access: 7 results,  Acknowledgement Compliant: 1 results) Presentation (21 results) (of which Int'l Joint Research: 10 results,  Invited: 8 results) Book (1 results) Remarks (2 results)

  • [Journal Article] Membrane-induced initial structure of α-synuclein control its amyloidogenesis on model membranes2018

    • Author(s)
      Terakawa Mayu S.、Lee Young-Ho、Kinoshita Misaki、Lin Yuxi、Sugiki Toshihiko、Fukui Naoya、Ikenoue Tatsuya、Kawata Yasushi、Goto Yuji
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - Biomembranes

      Volume: 1860 Issue: 3 Pages: 757-766

    • DOI

      10.1016/j.bbamem.2017.12.011

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Non-native alpha-helices in the initial folding intermediate facilitate the ordered assembly of the beta-barrel in beta-lactoglobulin2017

    • Author(s)
      Sakurai, K., Yagi, M., Konuma, T., Takahashi, S., Nishimura, C., Goto, Y.
    • Journal Title

      Biochemistry

      Volume: 56 Issue: 36 Pages: 4799-4807

    • DOI

      10.1021/acs.biochem.7b00458

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Heparin-dependent aggregation of hen egg white lysozyme reveals two distinct mechanisms of amyloid fibrillation2017

    • Author(s)
      Nitani Ayame、Muta Hiroya、Adachi Masayuki、So Masatomo、Sasahara Kenji、Sakurai Kazumasa、Chatani Eri、Naoe Kazumitsu、Ogi Hirotsugu、Hall Damien、Goto Yuji
    • Journal Title

      Journal of Biological Chemistry

      Volume: 292 Issue: 52 Pages: 21219-21230

    • DOI

      10.1074/jbc.m117.813097

    • NAID

      120006557632

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Model membrane size-dependent amyloidogenesis of Alzheimer's amyloid-β peptides2017

    • Author(s)
      Kinoshita Misaki、Kakimoto Erina、Terakawa Mayu S.、Lin Yuxi、Ikenoue Tatsuya、So Masatomo、Sugiki Toshihiko、Ramamoorthy Ayyalusamy、Goto Yuji、Lee Young-Ho
    • Journal Title

      Physical Chemistry Chemical Physics

      Volume: 19 Issue: 24 Pages: 16257-16266

    • DOI

      10.1039/c6cp07774a

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A. Reduced Lipid Bilayer Thickness Regulates the Aggregation and Cytotoxicity of Amyloid-β2017

    • Author(s)
      Kyle J. Korshavn, Cristina Satriano, Yuxi Lin, Rongchun Zhang, Mark Dulchavsky, Anirban Bhunia, Magdalena I. Ivanova, Young-Ho Lee, Carmelo La Rosa, Mi Hee Lim, Ayyalusamy Ramamoorthy
    • Journal Title

      J. Biol. Chem.

      Volume: 292 Issue: 11 Pages: 4638-4650

    • DOI

      10.1074/jbc.m116.764092

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Biochemical and Biophysical Methods to Examine Effects of Site-directed Mutagenesis on Enzymatic Activities and Interprotein Interactions.2017

    • Author(s)
      Kinoshita M., Kim J.Y., Lin Y., Markova N., Hase T., Lee Y.-H.
    • Journal Title

      Methods in Molecular Biology

      Volume: 1498 Pages: 439-460

    • DOI

      10.1007/978-1-4939-6472-7_30

    • ISBN
      9781493964703, 9781493964727
    • Related Report
      2016 Research-status Report
    • Peer Reviewed
  • [Journal Article] Energetic basis on interactions between ferredoxin and ferredoxin NADP+ reductase at varying physiological conditions.2016

    • Author(s)
      Kinoshita, M., Kim, J.Y., S., Lin, Y., Hun Mok K., Kataoka, Y., Ishimori, K., Markova, N., Kurisu, G., Hase, T., Lee, Y.H.
    • Journal Title

      Biochem. Biophys. Res. Commun.

      Volume: 482 Issue: 4 Pages: 909-915

    • DOI

      10.1016/j.bbrc.2016.11.132

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Amorphous Aggregation of Cytochrome c with Inherently Low Amyloidogenicity Is Characterized by the Metastability of Supersaturation and the Phase Diagram2016

    • Author(s)
      Lin Yuxi, Kardos József, Imai Mizue, Ikenoue Tatsuya, Kinoshita Misaki, Sugiki Toshihiko, Ishimori Koichiro, Goto Yuji, and Lee Young-Ho
    • Journal Title

      Langmuir

      Volume: 32 Issue: 8 Pages: 2010-2022

    • DOI

      10.1021/acs.langmuir.5b03810

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] 蛋白質圧力変性のNMR化学シフトデータの二次式回帰分析法と主成分分析による解析結果の比較2017

    • Author(s)
      櫻井一正
    • Organizer
      第58回高圧討論会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 複数のアミロイド性ペプチドの混在する複雑な系におけるアミロイド線維形成機構2017

    • Author(s)
      牟田 寛弥、 宗 正智、 櫻井 一正、 後藤 祐児
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Comparison between conventional, quadratic analysis and chemical-shift-PCA on data of pressure-dependent chemical shift changes2017

    • Author(s)
      櫻井一正
    • Organizer
      8th International Meeting on Biomolecules under Pressure (IMBP)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Amyloid Fibrillation in Promiscuous Systems Containing Various Amyloidogenic Peptides2017

    • Author(s)
      牟田 寛弥、 宗 正智、 櫻井 一正、 後藤 祐児
    • Organizer
      第17回日本蛋白質科学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Thermodynamics of protein misfolding and aggregation2017

    • Author(s)
      李映昊
    • Organizer
      Samsung Global Research Symposium on Structure, Dynamics, and Thermodynamics of Biomolecular Networks
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Delicate interprotein interactions control the onset of Parkinson's disease and apoptosis.2017

    • Author(s)
      李映昊
    • Organizer
      The 8th KRIBB ASIA-PACIFIC IDP SYMPOSIUM
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Thermodynamics of protein misfolding and aggregation.2017

    • Author(s)
      李映昊
    • Organizer
      Invited seminar at Kanazawa University
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Protein misfolding and aggregation for neurodegenerative diseases and amyloidosis.2017

    • Author(s)
      李映昊
    • Organizer
      Invited seminar at the Institute of Multidisciplinary Research for Advanced Materials of Tohoku University
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Lessons from the recent studies on protein aggregation for neurodegenerative diseases and amyloidosis.2017

    • Author(s)
      李映昊
    • Organizer
      The Annual Meeting of Japanese Photochemistry
    • Related Report
      2017 Annual Research Report
  • [Presentation] New approaches for the diagnosis and treatment of protein misfolding diseases.2017

    • Author(s)
      李映昊
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Thermodynamics of protein misfolding and aggregation2017

    • Author(s)
      李映昊
    • Organizer
      International Symposium on Protein Misfolding Diseases, University of Catania, Italy
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Simple and Informative NMR Application to the Study on Protein Folding, Misfolding, and Interaction2017

    • Author(s)
      李映昊
    • Organizer
      The Annual Meeting of Korean Magnetic Resonance Society
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Thermodynamics and calorimetry on the biological system and disease-related protein aggregation2017

    • Author(s)
      李映昊
    • Organizer
      Invited seminar at Konkuk University
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Thermodynamic study on interprotein interactions using isothermal titration calorimetry2017

    • Author(s)
      李映昊
    • Organizer
      第17回日本蛋白質科学会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Understanding of misled protein behavior and its control2017

    • Author(s)
      李映昊
    • Organizer
      Invited seminar at Sookmyung Women's University
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Principal component analysis of chemical shift perturbation data of a pressure-dependent conformational change of amyloidogenic precursor state of β2-microglobulin2016

    • Author(s)
      K. Sakurai, A. Maeno, K. Akasaka.
    • Organizer
      XXVIIth International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      Kyoto Internatinal Cenference Center, Japan
    • Year and Date
      2016-08-21
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] The interaction of sulfite reductase with ferredoxin and its relation to enzyme activity2016

    • Author(s)
      Young-Ho Lee
    • Organizer
      日本生物物理学会北海道支部支援招待講演
    • Place of Presentation
      北海道大学(北海道札幌市)
    • Year and Date
      2016-02-26
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] New findings on thermodynamic properties of disease-inducing protein aggregation2016

    • Author(s)
      Lee, Y.-H.
    • Organizer
      Japan-Korea Bilateral Symposium on Multi-Scale Structural Biology, IPR seminar
    • Place of Presentation
      Inst. Protein Res., Osaka. Univ.
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] The study on thermodynamic property of protein misfolding and aggregation2015

    • Author(s)
      Young-Ho Lee
    • Organizer
      第38回日本分子生物学会・第88回日本生化学会大会
    • Place of Presentation
      神戸ポートアイランド(兵庫県神戸市)
    • Year and Date
      2015-12-03
    • Related Report
      2015 Research-status Report
  • [Presentation] Insights into the transition state of pressure-induced denaturation of β2-microglobulin and its pathogenic variants2015

    • Author(s)
      Kazumasa Sakurai
    • Organizer
      大阪大学蛋白質研究所―オーストラリア国立大学化学研究科合同シンポジウム
    • Place of Presentation
      キャンベラ、オーストラリア
    • Year and Date
      2015-11-14
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 野生型及び病原性変異体β2ミクログロブリンの圧力変性反応の研究2015

    • Author(s)
      Kazumasa Sakurai, Akihiro Toyomasu, Akihiro Maeno and Kazuyuki Akasaka
    • Organizer
      日本生物物理学会第53回年会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Research-status Report
  • [Book] Protein-Protein Interactions (PPIs): Types, Methods for Detection and Analysis2016

    • Author(s)
      T. Ikenoue, Y. Lin, M. Kinoshita, K. Sakurai, Y. Goto, Y.-H. Lee.
    • Total Pages
      130
    • Publisher
      Nova Science Publishers
    • Related Report
      2016 Research-status Report
  • [Remarks] 近畿大学生物理工学部生物工学科

    • URL

      http://www.waka.kindai.ac.jp/tea/biotech/

    • Related Report
      2017 Annual Research Report
  • [Remarks] 大阪大学 蛋白質研究所

    • URL

      http://www.protein.osaka-u.ac.jp/

    • Related Report
      2017 Annual Research Report

URL: 

Published: 2015-04-16   Modified: 2020-01-20  

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