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Analysis of gene co-option mechanisms involving epigenetic regulation

Research Project

Project/Area Number 15K07082
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Developmental biology
Research InstitutionHiroshima University (2017)
Nagahama Institute of Bio-Science and Technology (2015-2016)

Principal Investigator

OGINO Hajime  広島大学, 両生類研究センター, 教授 (10273856)

Co-Investigator(Renkei-kenkyūsha) WADA Shuichi  長浜バイオ大学, バイオサイエンス学部, 准教授 (20378607)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2017: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2016: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2015: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywords発生 / 進化 / 感覚器プラコード / 神経堤 / エピジェネティック制御 / ツメガエル / ナメクジウオ / 遺伝子転用
Outline of Final Research Achievements

Jmjd3 is the histone H3 demethylase that was acquired in the vertebrate ancestor by an ancient genome duplication event. In this study, we attempted to reveal the evolutionary mechanisms of neural crest and sensory placode by studying gene regulatory networks activated by the Jmjd3. Our search for the downstream genes of Jmjd3 identified not only genes that are involved in neural crest and/or sensory placode formation (noggin, phox2, etc.) but also a variety of chromatin modifiers including the histone acetyltransferase, kat5. We also performed the enhancer analysis of Amphioxus hedgehog gene, which suggested that the vertebrate ortholog, Ihh, innovated the neural crest / branchial arch enhancer by modifying the ancestral pharyngeal endoderm enhancer during the evolution.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (35 results)

All 2017 2016 2015 Other

All Int'l Joint Research (6 results) Journal Article (7 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 6 results,  Open Access: 6 results,  Acknowledgement Compliant: 2 results) Presentation (20 results) (of which Int'l Joint Research: 5 results,  Invited: 6 results) Remarks (2 results)

  • [Int'l Joint Research] University of California, Berkeley/JGI, US Department of Energy/University of Texas at Austin(米国)

    • Related Report
      2016 Research-status Report
  • [Int'l Joint Research] University of Calgary(カナダ)

    • Related Report
      2016 Research-status Report
  • [Int'l Joint Research] UNIST(韓国)

    • Related Report
      2016 Research-status Report
  • [Int'l Joint Research] Radboud University(オランダ)

    • Related Report
      2016 Research-status Report
  • [Int'l Joint Research] The University of Western Australia(オーストラリア)

    • Related Report
      2016 Research-status Report
  • [Int'l Joint Research]

    • Related Report
      2016 Research-status Report
  • [Journal Article] Co-accumulation of cis-regulatory and coding mutations during the pseudogenization of the Xenopus laevis homoeologs six6.L and six6.S.2017

    • Author(s)
      Ochi H, Kawaguchi A, Tanouchi M, Suzuki N, Kumada T, Iwata Y, Ogino H.
    • Journal Title

      Developmental Biology

      Volume: 427 Issue: 1 Pages: 84-92

    • DOI

      10.1016/j.ydbio.2017.05.004

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Asymmetrically reduced expression of hand1 homeologs involving a single nucleotide substitution in a cis-regulatory element.2017

    • Author(s)
      Ochi, H., Suzuki, N., Kawaguchi, A. and Ogino, H.
    • Journal Title

      Dev. Biol.

      Volume: 425 Issue: 2 Pages: 152-160

    • DOI

      10.1016/j.ydbio.2017.03.021

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Conservatism and variability of gene expression profiles among homeologous transcription factors in Xenopus laevis.2017

    • Author(s)
      Watanabe, M., Yasuoka, Y., Mawaribuchi, S., Kuretani, A., Ito, M., Kondo, M., Ochi, H., Ogino, H., Fukui, A., Taira, M. and Kinoshita, T.
    • Journal Title

      Dev. Biol.

      Volume: 426 Issue: 2 Pages: 301-324

    • DOI

      10.1016/j.ydbio.2016.09.017

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genome evolution in the allotetraploid frog Xenopus laevis2016

    • Author(s)
      Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A et al.
    • Journal Title

      Nature

      Volume: 538 Issue: 7625 Pages: 336

    • DOI

      10.1038/nature19840

    • NAID

      120006240046

    • URL

      https://pure.teikyo.jp/en/publications/7cb1b606-b88e-4144-9b58-280a85c3c635

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Disruption of Rest Leads to the Early Onset of Cataracts with the Aberrant Terminal Differentiation of Lens Fiber Cells.2016

    • Author(s)
      Aoki, H., Ogino, H., Tomita, H., Hara, A. and *Kunisada, T.
    • Journal Title

      PLoS One

      Volume: 11 Issue: 9 Pages: e0163042-e0163042

    • DOI

      10.1371/journal.pone.0163042

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cis-regulatory evolution after whole genome duplication2015

    • Author(s)
      荻野 肇
    • Journal Title

      生体の科学

      Volume: 66 Issue: 3 Pages: 256-260

    • DOI

      10.11477/mf.2425200165

    • ISSN
      0370-9531, 1883-5503
    • Year and Date
      2015-06-15
    • Related Report
      2015 Research-status Report
  • [Journal Article] Epigenetic modification maintains intrinsic limb-cell identity in Xenopus limb bud regeneration.2015

    • Author(s)
      Hayashi, S., Kawaguchi, A., Uchiyama, I., Kawasumi-Kita, A., Kobayashi, T., Nishide, H., Tsutsumi, R., Tsuru, K., Inoue, T., Ogino, H., Agata, K., Tamura, K. and *Yokoyama, H.
    • Journal Title

      Dev. Biol.

      Volume: 406 Issue: 2 Pages: 271-282

    • DOI

      10.1016/j.ydbio.2015.08.013

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Cis-regulatory Evolution Following "Ancient" and "Recent" Genome Duplication Events in Vertebrates.2017

    • Author(s)
      *Ogino, H.
    • Organizer
      International Symposium at Hiroshima University: Amphibian development, regeneration, evolution and beyond
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ツメガエルを用いたゲノム研究とリソース事業について.2017

    • Author(s)
      *荻野 肇
    • Organizer
      第2回イベリアトゲイモリ研究会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] The hypomorphic mutations hidden in the allotetraploid genome of Xenopus laevis.2017

    • Author(s)
      Tanouchi, M., Ochi, H., Kawaguchi, A., Igawa, T., Iwata, Y., Sakagami, K. and *Ogino, H.
    • Organizer
      International Symposium at Hiroshima University: Amphibian development, regeneration, evolution and beyond
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Arid3a, a component of H3K9me3 demethylases, regulates the regeneration of the nephric duct through the evolutionary conserved regeneration signal response enhancer.2017

    • Author(s)
      Suzuki, N., Ogino, H. and *Ochi, H.
    • Organizer
      International Symposium at Hiroshima University: Amphibian development, regeneration, evolution and beyond
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ゲノム倍加に伴うエンハンサー減衰変異と機能低下型コード変異の共蓄積 .2017

    • Author(s)
      越智 陽城,川口 茜,田内 幹大,鈴木 菜花,熊田 樹,岩田 唯,*荻野 肇
    • Organizer
      生命科学系学会合同年次大会 ConBio2017
    • Related Report
      2017 Annual Research Report
  • [Presentation] 腎組織再生におけるArid3aによる再生シグナル応答エンハンサーの活性化メカニズム.2017

    • Author(s)
      鈴木 菜花,熊田 樹,荻野 肇,*越智 陽城
    • Organizer
      第88回日本動物学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] アフリカツメガエルにおけるCrispr/Casシステムの条件検討.2017

    • Author(s)
      田内 幹大,越智 陽城,井川 武,*荻野 肇
    • Organizer
      第11回日本ツメガエル研究集会
    • Related Report
      2017 Annual Research Report
  • [Presentation] ゲノム倍加後のコード配列進化におけるエンハンサー減衰変異の促進的役割.2016

    • Author(s)
      *荻野 肇,越智陽城,川口 茜
    • Organizer
      第39回日本分子生物学会年会 シンポジウム「ゲノミクス、エピゲノミクス、インフォマティクスによるシス配列制御とその進化 過程の解明」
    • Place of Presentation
      パシフィコ横浜,神奈川県横浜市
    • Year and Date
      2016-12-01
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] Modification of cell differentiation competence by histone H3K27 demethylases and their involvement in tissue regeneration in Xenopus.2016

    • Author(s)
      *Ogino, H., Sudou, N., Kawaguchi, A., Ochi, H., Kamiguchi, S. and Kasahara, H.
    • Organizer
      The joint meeting of the 22nd international congress of zoology & the 87th meeting of the zoological society of Japan, symposium “Regeneration in Zoology”
    • Place of Presentation
      沖縄科学技術大学院大学, 沖縄県国頭郡恩納村
    • Year and Date
      2016-11-15
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] モデル両生類の飼育方法の標準化と実験材料の共有化について2016

    • Author(s)
      荻野 肇,越智陽城,亀井保博,川住愛子,北田容章,水戸川和正,長谷部 孝,林 利憲,鈴木賢一,鈴木美有紀,横山 仁
    • Organizer
      第2回次世代両生類研究会 「ゲノム・エピゲノムからリプログラミング・器官再生まで」
    • Place of Presentation
      岡崎コンファレンスセンター,愛知県岡崎市
    • Year and Date
      2016-08-09
    • Related Report
      2016 Research-status Report
  • [Presentation] Xenopus as a useful resource for studying gene evolution and disease-causing mutations.2016

    • Author(s)
      *Ogino, H.
    • Organizer
      International Meeting on Aquatic Model Organisms for Human Disease and Toxicology Research
    • Place of Presentation
      自然科学研究機構 岡崎コンファレンスセンター,愛知県岡崎市
    • Year and Date
      2016-03-18
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] ツメガエルの尾部再生におけるH3K27メチル化因子と脱メチル化因子の異なる役割.2015

    • Author(s)
      川口 茜,上口 真治,笠原 博人,*荻野 肇
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      神戸国際会議場,兵庫県神戸市
    • Year and Date
      2015-12-03
    • Related Report
      2015 Research-status Report
  • [Presentation] Xenopus laevis全ゲノム解析:同祖遺伝子の進化過程におけるシス変異とコード変異の相互作用.2015

    • Author(s)
      *荻野 肇,越智陽城,川口 茜
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      神戸国際会議場,兵庫県神戸市
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
  • [Presentation] Xenopus laevis全ゲノム解析:転写因子をコードする遺伝子群の初期発生および成体器官における発現パターンの解析.2015

    • Author(s)
      *渡部 稔,回渕 修治,安岡 有理,伊藤 道彦,近藤 真理子,越智 陽城,荻野 肇,福井 彰雅,平良 眞規,木下 勉
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      神戸国際会議場,兵庫県神戸市
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
  • [Presentation] Xenopus laevis全ゲノム解析:異質四倍体アフリカツメガエルにおけるHandとTwistの発現の共進化.2015

    • Author(s)
      *越智 陽城,鈴木 菜花,川口 茜,荻野 肇
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      神戸国際会議場,兵庫県神戸市
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
  • [Presentation] ヒストン脱メチル化因子 Jmjd3 による眼形成遺伝子pax6の発現制御.2015

    • Author(s)
      川口 茜,越智 陽城,須藤 則広,*荻野 肇
    • Organizer
      日本遺伝学会第87回大会プレナリーワークショップ
    • Place of Presentation
      東北大学 川内北キャンパス,宮城県仙台市
    • Year and Date
      2015-09-24
    • Related Report
      2015 Research-status Report
  • [Presentation] ゲノム重複に伴うシス調節配列の進化 ―ネッタイツメガエルとアフリカツメガエルを用いたアプローチ―.2015

    • Author(s)
      *荻野 肇
    • Organizer
      次世代両生類研究会 第一回会合「両生類研究の将来を考えるーゲノム科学による有尾・無尾両生類研究の橋渡し」
    • Place of Presentation
      自然科学研究機構 岡崎コンファレンスセンター,愛知県岡崎市
    • Year and Date
      2015-08-24
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] ツメガエル再生細胞の増殖分化調節におけるヒストンメチル化制御因子群の機能分担.2015

    • Author(s)
      川口 茜,*荻野 肇
    • Organizer
      次世代両生類研究会 第一回会合「両生類研究の将来を考えるーゲノム科学による有尾・無尾両生類研究の橋渡し」
    • Place of Presentation
      自然科学研究機構 岡崎コンファレンスセンター,愛知県岡崎市
    • Year and Date
      2015-08-24
    • Related Report
      2015 Research-status Report
  • [Presentation] Differential roles for the H3K27 methylase and demethylases in Xenopus tail regeneration.2015

    • Author(s)
      Kawaguchi, A. and *Ogino, H.
    • Organizer
      第48回日本発生生物学会大会
    • Place of Presentation
      つくば国際会議場,茨城県つくば市
    • Year and Date
      2015-06-03
    • Related Report
      2015 Research-status Report
  • [Presentation] Identification and characterization of regeneration signal response enhancers in Xenopus pronephros.2015

    • Author(s)
      Suzuki, N., Hirano, K., Ogino, H. and *Ochi, H.
    • Organizer
      第48回日本発生生物学会大会
    • Place of Presentation
      つくば国際会議場,茨城県つくば市
    • Year and Date
      2015-06-03
    • Related Report
      2015 Research-status Report
  • [Remarks] 広島大学両生類研究センター バイオリソース研究部門

    • URL

      http://amphibian.hiroshima-u.ac.jp/members/bioresource/

    • Related Report
      2017 Annual Research Report
  • [Remarks] 教員の紹介(荻野 肇)-長浜バイオ大学

    • URL

      http://www.nagahama-i-bio.ac.jp/research/%E6%95%99%E5%93%A1%E3%81%AE%E7%B4%B9%E4%BB%8B%EF%BC%88%E8%8D%BB%E9%87%8E-%E8%82%87%EF%BC%89/

    • Related Report
      2015 Research-status Report

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Published: 2015-04-16   Modified: 2019-03-29  

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