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Construction of the new method for amino acid racemase screening using amino acid auxotrophic E. coli

Research Project

Project/Area Number 15K07152
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Animal physiology/Animal behavior
Research InstitutionKochi University

Principal Investigator

uda kouji  高知大学, 教育研究部自然科学系理工学部門, 講師 (10448392)

Project Period (FY) 2015-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2018: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2017: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2016: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2015: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
KeywordsD-アミノ酸 / アミノ酸ラセマーゼ / アミノ酸
Outline of Final Research Achievements

Recently, it has been reported that D-amino acids were found in many animals and have various physiological functions. Additionally, D-amino acids are known to be synthesized by the amino acid racemase. In this study, we isolated the amino acid racemases by novel screening method using the amino acid auxotrophic E. coli. Furthermore, we searched homologues of amino acid racemase from GenBank DNA sequence databases. Subsequently, the enzyme activity of these amino acid racemase genes was confirmed using a recombinant enzymes. This study revealed that serine racemase and aspartate racemase are widely distributed in the animal kingdom.

Academic Significance and Societal Importance of the Research Achievements

近年,哺乳類において,D-アミノ酸が様々な生理機能をもつことが明らかとなってきたが,それ以外の動物における生理機能は殆ど明らかになっていない。本研究では,動物界の主要な動物門全てにおいて,セリンラセマーゼ及びアスパラギン酸ラセマーゼが存在することを示した。このことは,動物界においてD-セリンやD-アスパラギン酸が広く合成され,動物において重要かつ普遍的な生理機能を持つことを示唆した。今後はD-アミノ酸の普遍的な生理機能に関する研究が進むことが期待される。

Report

(5 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (21 results)

All 2019 2018 2017 2016 2015 Other

All Int'l Joint Research (1 results) Journal Article (9 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 8 results,  Acknowledgement Compliant: 3 results) Presentation (11 results) (of which Int'l Joint Research: 3 results)

  • [Int'l Joint Research] University of California, San Francisco/University of Kentucky(米国)

    • Related Report
      2018 Annual Research Report
  • [Journal Article] Cloning and characterization of a novel aspartate/glutamate racemase from the acorn worm Saccoglossus kowalevskii2019

    • Author(s)
      Uda Kouji、Ishizuka Naoki、Edashige Yumika、Kikuchi Arika、Radkov Atanas D.、Moe Luke A.
    • Journal Title

      Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology

      Volume: 232 Pages: 87-92

    • DOI

      10.1016/j.cbpb.2019.03.006

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Arginine kinases from the precious corals Corallium rubrum and Paracorallium japonicum: presence of two distinct arginine kinase gene lineages in cnidarians.2017

    • Author(s)
      Matsuo, T., Yano, D., Uda, K., Iwasaki, N., and Suzuki, T.
    • Journal Title

      Protein J.

      Volume: 36 Issue: 6 Pages: 502-512

    • DOI

      10.1007/s10930-017-9745-7

    • Related Report
      2017 Research-status Report
    • Peer Reviewed
  • [Journal Article] Triple serine loop region regulates the aspartate racemase activity of the serine/aspartate racemase family2017

    • Author(s)
      Uda Kouji、Abe Keita、Dehara Yoko、Mizobata Kiriko、Edashige Yumika、Nishimura Rie、Radkov Atanas D.、Moe Luke A.
    • Journal Title

      Amino Acids

      Volume: 49 Issue: 10 Pages: 1743-1754

    • DOI

      10.1007/s00726-017-2472-8

    • Related Report
      2017 Research-status Report
  • [Journal Article] Characterization of a homolog of mammalian serine racemase from Caenorhabditis elegans: the enzyme is not critical for the metabolism of serine in vivo2016

    • Author(s)
      Katane M, Saitoh Y, Uchiyama K, Nakayama K, Saitoh Y, Miyamoto T, Sekine M, Uda K, Homma H
    • Journal Title

      Genes to Cells

      Volume: 21(9) Issue: 9 Pages: 966-977

    • DOI

      10.1111/gtc.12398

    • Related Report
      2016 Research-status Report
    • Peer Reviewed
  • [Journal Article] D-Amino Acid Catabolism Is Common Among Soil-Dwelling Bacteria2016

    • Author(s)
      D Radkov A, McNeill K, Uda K, A Moe L.
    • Journal Title

      Microbes and Environments

      Volume: 31 Issue: 2 Pages: 165-168

    • DOI

      10.1264/jsme2.ME15126

    • NAID

      130005158510

    • ISSN
      1342-6311, 1347-4405
    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Arginine kinase from Myzostoma cirriferum, a basal member of annelids.2016

    • Author(s)
      Yano, D., Mimura, S., Uda, K., and Suzuki, T.
    • Journal Title

      Comp. Biochem. Physiol. Part B. Biochem. Mol. Biol.

      Volume: 198 Pages: 73-78

    • DOI

      10.1016/j.cbpb.2016.04.004

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] セリン/アスパラギン酸ラセマーゼの構造と機能の進化2016

    • Author(s)
      宇田幸司
    • Journal Title

      比較生理生化学

      Volume: 33 Pages: 68-76

    • NAID

      130006847647

    • Related Report
      2016 Research-status Report
    • Peer Reviewed
  • [Journal Article] Distribution and evolution of the serine/aspartate racemase family in invertebrates.2016

    • Author(s)
      Uda K, Abe K, Dehara Y, Mizobata K, Sogawa N, Akagi Y, Saigan M, Radkov AD, Moe LA.
    • Journal Title

      Amino Acids

      Volume: 48 Issue: 2 Pages: 387-402

    • DOI

      10.1007/s00726-015-2092-0

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Arginine kinases from the marine feather star Tropiometra afra macrodiscus: the first finding of a prenylation signal sequence in metazoan phosphagen kinases.2015

    • Author(s)
      Chouno, K., Yano, D., Uda, K., Fujita, T., Iwasaki, I. and Suzuki, T.
    • Journal Title

      Comp. Biochem. Physiol. Part B. Biochem. Mol. Biol.

      Volume: 187 Pages: 55-64

    • DOI

      10.1016/j.cbpb.2015.04.014

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] 次世代シーケンサーデータを用いた環形動物アミノ酸ラセマーゼ遺伝子の単離と機能解析2018

    • Author(s)
      枝重裕美香,中嶋幹太,早稲田なな,宇田幸司
    • Organizer
      第14回D-アミノ酸学会学術講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 細菌に存在する新規アルギニンラセマーゼ2018

    • Author(s)
      西村理恵,宇田幸司
    • Organizer
      第14回D-アミノ酸学会学術講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Molecular cloning and characterization of eukaryotic serine racemase homologs in bacteria.2018

    • Author(s)
      Rie Nishimura, Atanas D. Radkov, Luke A. Moe, Kouji Uda
    • Organizer
      IDAR 2017
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Characterization of the serine/aspartate racemases in plants.2018

    • Author(s)
      Yumika Edashige, Rie Nishimura, Yuuna Shikano, Toru Matsui, Kouji Uda
    • Organizer
      IDAR 2017
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Substrate specificities of the serine/aspartate racemases.2017

    • Author(s)
      Kouji Uda, Yumika Edashige, Naoki Ishizuka, Toshie Sadakata
    • Organizer
      IDAR 2017
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] ナス科植物に存在するアミノ酸ラセマーゼ遺伝子の探索2016

    • Author(s)
      宇田幸司,枝重裕美香
    • Organizer
      日本農芸化学会中四国支部大会
    • Place of Presentation
      高知
    • Related Report
      2016 Research-status Report
  • [Presentation] 植物におけるセリン/アスパラギン酸ラセマーゼ遺伝子の分布と進化2016

    • Author(s)
      宇田幸司,枝重裕美香,鹿野祐奈,西村理恵,松井透
    • Organizer
      第12回D-アミノ酸学会学術講演会
    • Place of Presentation
      高知
    • Related Report
      2016 Research-status Report
  • [Presentation] 動物におけるセリン/アスパラギン酸ラセマーゼの構造と機能の進化2016

    • Author(s)
      宇田幸司
    • Organizer
      第12回D-アミノ酸学会学術講演会
    • Place of Presentation
      高知
    • Related Report
      2016 Research-status Report
  • [Presentation] セリンラセマーゼ及びアスパラギン酸ラセマーゼの基質特異性に関与するアミノ酸残基2015

    • Author(s)
      出原陽子、溝端キリコ、安部啓太、宇田幸司
    • Organizer
      BMB2015(第38回日本分子生物学会年会、第88回日本生化学会大会 合同大会)
    • Place of Presentation
      神戸
    • Year and Date
      2015-12-11
    • Related Report
      2015 Research-status Report
  • [Presentation] マガキ・アスパラギン酸ラセマーゼ及びセリンラセマーゼの基質特異性の改変,2015

    • Author(s)
      溝端キリコ,出原陽子,安部啓太,宇田幸司
    • Organizer
      第11回D-アミノ酸学会学術講演会
    • Place of Presentation
      長岡
    • Year and Date
      2015-08-25
    • Related Report
      2015 Research-status Report
  • [Presentation] セリン /アスパラギン酸セマーゼ遺伝子の分布と進化2015

    • Author(s)
      宇田幸司,石塚直樹
    • Organizer
      第11回D-アミノ酸学会学術講演会
    • Place of Presentation
      長岡
    • Year and Date
      2015-08-25
    • Related Report
      2015 Research-status Report

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Published: 2015-04-16   Modified: 2020-03-30  

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