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Functional analysis of Rif1 in regulating muticopy gene cluster and super state of pluripotent stem cells

Research Project

Project/Area Number 15K07164
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Genetics/Chromosome dynamics
Research InstitutionTokyo Metropolitan Institute of Medical Science

Principal Investigator

YOSHIZAWA Naoko  公益財団法人東京都医学総合研究所, ゲノム医科学研究分野, 主席研究員 (30344071)

Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2015: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
KeywordsRif1 / 初期胚 / 2細胞期 / 内在性レトロウィルス / エンハンサー / Zscan4 / ヒストン修飾 / DNAメチル化 / H3K27Ac / 遺伝子クラスター / 2細胞期 / トランスポゾン / 2細胞期初期胚
Outline of Final Research Achievements

Mouse embryonic stem (ES) cells contain a small population expressing zygotic genes usually transcribed at 2-cell stage (2CG). Base on the previous finding, 2CG-high cells induced by Rif1 knockdown were precisely analyzed in this study. The main results were as follows; 1. mRif1 knockdown lead to massive derepression of 2CG and endoretrovirus Merv-L. 2. DNA methylation at Zscan4 loci was not substantially reduced. 3. H3K27Ac was noticeably increased in Zscan4 gene loci and formed enhancer-like structure for at least 20 kb. Futheremore, Transient expression of mRif1 deletion mutant without N-terminal HEAT repeat structure could induce 2CG-high states.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (10 results)

All 2018 2017 2016 2015 Other

All Journal Article (3 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 3 results,  Open Access: 3 results) Presentation (4 results) (of which Int'l Joint Research: 1 results) Book (1 results) Remarks (2 results)

  • [Journal Article] Oligomer formation and G-quadruplex binding by purified murine Rif1 protein, a key organizer of higher-order chromatin architecture2018

    • Author(s)
      Moriyama Kenji、Yoshizawa-Sugata Naoko、Masai Hisao
    • Journal Title

      Journal of Biological Chemistry

      Volume: 293 Issue: 10 Pages: 3607-3624

    • DOI

      10.1074/jbc.ra117.000446

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Telomere-binding factors in the regulation of DNA replication2017

    • Author(s)
      Masai, H., Kanoh, Y., Moriyama, K., Yamazaki, S., Yoshizawa, N., and Matsumoto, S.
    • Journal Title

      Genes & Genetic Systems

      Volume: 92 Issue: 3 Pages: 119-125

    • DOI

      10.1266/ggs.17-00008

    • NAID

      130006316033

    • ISSN
      1341-7568, 1880-5779
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Epigenetic Regulation of the Blimp-1 Gene (Prdm1) in B Cells Involves Bach2 and Histone Deacetylase 3*2016

    • Author(s)
      Tanaka H
    • Journal Title

      JBC

      Volume: 291 Issue: 12 Pages: 6316-6330

    • DOI

      10.1074/jbc.m116.713842

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] マウスES細胞におけるZscan4の発現脱抑制とRif1依存的なクロマチン構造変化の解析2017

    • Author(s)
      吉沢 直子、正井 久雄
    • Organizer
      生命科学系学会合同年次大会(第40回日本分子生物学会)
    • Related Report
      2017 Annual Research Report
  • [Presentation] Early zygotic gene expression and organized differentiation are regulated by a conserved chromatin binding protein Rif1 in mouse ES cells.2016

    • Author(s)
      Naoko Yoshizawa-Sugata and Hisao Masai
    • Organizer
      3R Symposium
    • Place of Presentation
      ホテル一畑(島根県松江市)
    • Year and Date
      2016-11-15
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Rif1 regulates expression of cluster genes in mouse ES cells and reprogramming2016

    • Author(s)
      Yoshizawa-Sugata N, Ono T, Yamazaki S, Shindo M, Nishito Y, Masai H
    • Organizer
      International Symposium on Epigenome Dynamics and Regulation in Germ Cells
    • Place of Presentation
      京都大学百周年時計台記念館国際交流ホール(京都府京都市)
    • Year and Date
      2016-02-17
    • Related Report
      2015 Research-status Report
  • [Presentation] Rif1によるES細胞の遺伝子クラスターの発現及びリプログラミングの制御2015

    • Author(s)
      吉沢直子、小野富男、山崎聡、進藤真由美、西藤泰昌、正井久雄
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      神戸国際会議場(兵庫県神戸市)
    • Year and Date
      2015-12-03
    • Related Report
      2015 Research-status Report
  • [Book] The Initiation of DNA Replication in Eukaryotes2016

    • Author(s)
      Yoshizawa-Sugata, N., Yamazaki, S. and Masai, H.
    • Total Pages
      15
    • Publisher
      Springer International Publishing
    • Related Report
      2015 Research-status Report
  • [Remarks] 東京都医学総合研究所 ゲノム動態プロジェクト

    • URL

      http://www.igakuken.or.jp/genome/

    • Related Report
      2017 Annual Research Report
  • [Remarks] 東京都医学総合研究所ーゲノム動態プロジェクトホームページ

    • URL

      http://www.igakuken.or.jp/genome/

    • Related Report
      2016 Research-status Report

URL: 

Published: 2015-04-16   Modified: 2019-03-29  

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