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Understanding the evolutionary dynamics of hair color related genes of small mammals and development of phylogeographicl markers

Research Project

Project/Area Number 15K07177
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Biodiversity/Systematics
Research InstitutionHokkaido University

Principal Investigator

SUZUKI Hitoshi  北海道大学, 地球環境科学研究院, 教授 (40179239)

Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2015: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords毛色関連遺伝子 / 系統地理学 / Mc1r / Asip / 多重遺伝子族 / ハプロタイプ構造解析 / メラニズム / 毛色変異 / 連鎖不平衡 / 黒目白毛変異 / ハツカネズミ / ヤチネズミ / 腹部特異的プロモーター / 系統地理 / 逆位 / Rattus exulans / Rattus rattus / haplotype structure / recombination / phylogeography / melanism
Outline of Final Research Achievements

Nuclear DNA haplotype structure analyses in the Japanese wild mice yielded a possible average fragment length of 170 kb of Mus musculus castaneus haplotypes in the M. m. musculus background genome in northern Japan, providing a rough estimate of its elapsed time of 800 generations under an assumption of continued backcrossing. Our analyses showed sporadic appearance of long fragments (2-5 Mb) from the west European subspecies Mus musculus domesticus, indicating contemporary stowaway introduction. In melanistic rats found on Okinawa, a predicted loss-of-function mutation caused by a cysteine to serine amino acid change at p.124C>S (c.370T>A) in the highly conserved functional domain of Asip was suggested to be responsible for the observed melanism. A haplotype structure analysis suggested the possibility of in-situ mutation of the Asip gene within the population on Okinawa.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (24 results)

All 2018 2017 2016 2015 Other

All Int'l Joint Research (4 results) Journal Article (6 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 5 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (14 results) (of which Int'l Joint Research: 3 results,  Invited: 1 results)

  • [Int'l Joint Research] アデレード大学(オーストラリア)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] チンバサ動植物公園(マダガスカル)

    • Related Report
      2016 Research-status Report
  • [Int'l Joint Research] Yangon University(ミャンマー)

    • Related Report
      2016 Research-status Report
  • [Int'l Joint Research] ヤンゴン大学(ミャンマー)

    • Related Report
      2015 Research-status Report
  • [Journal Article] Draft genome sequence of Japanese wood mouse, Apodemus speciosus2018

    • Author(s)
      Matsunami Masatoshi、Endo Daiji、Saitou Naruya、Suzuki Hitoshi、Onuma Manabu
    • Journal Title

      Data in Brief

      Volume: 16 Pages: 43-46

    • DOI

      10.1016/j.dib.2017.10.063

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Heterogeneous genetic make-up of Japanese house mice (Mus musculus) created by multiple independent introductions and spatio-temporally diverse hybridization processes2017

    • Author(s)
      Kuwayama Takashi、Nunome Mitsuo、Kinoshita Gohta、Abe Kuniya、Suzuki Hitoshi
    • Journal Title

      Biological Journal of the Linnean Society

      Volume: 122 Issue: 3 Pages: 661-674

    • DOI

      10.1093/biolinnean/blx076

    • NAID

      120006531976

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Potential cmausativeutation for melanism in rats identified in the agouti signaling protein gene (Asip) of the Rattus rattus species complex on Okinawa Island, Japan2017

    • Author(s)
      Sasamori, S., Wiewel, A. S., Thomson, V. A., Kobayashi, M., Nakata, K., Suzuki, H.
    • Journal Title

      Zoological Science

      Volume: 34 Issue: 6 Pages: 513-522

    • DOI

      10.2108/zs170027

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Estimation of the evolutionary rates of mitochondrial DNA in two Japanese wood mouse species based on calibrations with Quaternary environmental changes2017

    • Author(s)
      Hanazaki, K., Tomozawa, M., Kinoshita, G., Suzuki, Y., Yamamoto, M., Irino, T., Suzuki, H.
    • Journal Title

      Zoological Science

      Volume: 印刷中

    • NAID

      120006470976

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Variation in the coat-color-controlling genes, Mc1r and Asip, in the house mouse Mus musculus from Madagascar.2016

    • Author(s)
      Sakuma, Y., Ranorosoa, M. C., Kinoshita, G., Shimoji, H., Tsuchiya, K., Ohdachi, S. D., Arai, S., Tanaka, C., Ramino, H. and Suzuki, H. 2016
    • Journal Title

      Mammal Study

      Volume: 41 Issue: 3 Pages: 131-140

    • DOI

      10.3106/041.041.0303

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Evolutionary history of the small mammals in the Japanese Islands2016

    • Author(s)
      鈴木仁
    • Journal Title

      Honyurui Kagaku (Mammalian Science)

      Volume: 56 Issue: 2 Pages: 259-271

    • DOI

      10.11238/mammalianscience.56.259

    • NAID

      130005317174

    • ISSN
      0385-437X, 1881-526X
    • Related Report
      2016 Research-status Report
  • [Presentation] 北海道産アカネズミ(Apodemus speciosus)のミトコンドリアDNAの遺伝的空間構造とその形成史2017

    • Author(s)
      井上結太、花崎香織里、鈴木祐太郎、木下豪太、土屋公幸、鈴木仁
    • Organizer
      日本哺乳類学会2017年度大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 哺乳類の毛色関連遺伝子の変異と進化するための進化2017

    • Author(s)
      鈴木仁
    • Organizer
      日本哺乳類学会2017年度大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 毛色関連遺伝子 Mc1rとAsipの進化に向けた進化のしくみ2017

    • Author(s)
      鈴木仁
    • Organizer
      日本遺伝学会第89回大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] ミトコンドリアDNA の進化速度が時間依存的に変化する要因2017

    • Author(s)
      井上結太、鈴木仁
    • Organizer
      日本動物学会第88回富山大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] ミャンマー産ナンヨウネズミにおける毛色多型と毛色関連遺伝子 Mc1r と Asip の配列多 様性の評価2016

    • Author(s)
      小林 素子, San Maung Maung, Thida Lay Thwe, 片倉 賢, 鈴木 仁
    • Organizer
      日本哺乳類学会2016年度大会
    • Place of Presentation
      筑波大学(茨城県つくば市)
    • Year and Date
      2016-09-25
    • Related Report
      2016 Research-status Report
  • [Presentation] ハツカネズミにおける毛色関連遺伝子 Mc1r および Asip 遺伝子変異の解析2016

    • Author(s)
      佐久間 有希, 木下 豪太, 下地 博之, 鈴木 仁, 土屋 公幸, 田中 ちひろ, Hajanirina Ramin, Marie C Ranorosoa
    • Organizer
      日本哺乳類学会2016年度大会
    • Place of Presentation
      筑波大学(茨城県つくば市)
    • Year and Date
      2016-09-25
    • Related Report
      2016 Research-status Report
  • [Presentation] ミトコンドリア DNA 変異に基づく日本列島の小型哺乳類における進化的動態の比較2016

    • Author(s)
      本田 明日香, 村上 翔大, 中本 あずさ, 原田 正史, 土屋 公幸, 鈴木 仁
    • Organizer
      日本哺乳類学会2016年度大会
    • Place of Presentation
      筑波大学(茨城県つくば市)
    • Year and Date
      2016-09-25
    • Related Report
      2016 Research-status Report
  • [Presentation] 日本産小型哺乳類の進化史学2016

    • Author(s)
      鈴木仁
    • Organizer
      日本哺乳類学会2016年度大会
    • Place of Presentation
      筑波大学(茨城県つくば市)
    • Year and Date
      2016-09-25
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] ミトコンドリア DNA および核遺伝子に基づくコウベモグラの地域系統群の調査2016

    • Author(s)
      中本 あずさ, 原田 正史, 篠原 明男, 土屋 公幸, 鈴木 仁
    • Organizer
      日本哺乳類学会2016年度大会
    • Place of Presentation
      筑波大学(茨城県つくば市)
    • Year and Date
      2016-09-24
    • Related Report
      2016 Research-status Report
  • [Presentation] Bandicota属の分子系統と毛色変異~Mc1r配列上の黒色化責任変異の探索~2015

    • Author(s)
      森智子、土屋公幸、Thida Lay Thwe、Myin Zu Min、鈴木仁
    • Organizer
      日本動物学会北海道支部第60回大会
    • Place of Presentation
      北海道大学理学部5号館(北海道・札幌市)
    • Year and Date
      2015-08-22
    • Related Report
      2015 Research-status Report
  • [Presentation] ミトコンドリアDNAおよび核DNAに基づくコウベモグラの遺伝的集団構造についての研究2015

    • Author(s)
      中本あずさ、原田正史、篠原明男、土屋公幸、鈴木仁
    • Organizer
      日本動物学会北海道支部第60回大会
    • Place of Presentation
      北海道大学理学部5号館(北海道・札幌市)
    • Year and Date
      2015-08-22
    • Related Report
      2015 Research-status Report
  • [Presentation] Characterization of Coat Color Variation in Bandicoot Rats Species from Myanmar Using Mc1r Sequence and Spectrophotometric Data2015

    • Author(s)
      森智子、土屋公幸、Saw Bawm、新井智、Thida Lay Thwe、Myin Zu Min、片倉賢、安田俊平、鈴木仁
    • Organizer
      Vth International Wildlife Management Congress (IWMC)
    • Place of Presentation
      札幌コンベンションセンター(北海道・札幌市)
    • Year and Date
      2015-07-26
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Impact of Ice Ages on the Genetic Population Structure of the Western Japanese Mole Inferred from Mitochondrial and Nuclear DNA Sequences2015

    • Author(s)
      中本あずさ、原田正史、篠原明男、土屋公幸、鈴木仁
    • Organizer
      Vth International Wildlife Management Congress (IWMC)
    • Place of Presentation
      札幌コンベンションセンター(北海道・札幌市)
    • Year and Date
      2015-07-26
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Genome sequencing project of wood mouse (Apodemus speciosus) and its use for evolutionary study2015

    • Author(s)
      Masatoshi Matsunami, Daiji Endo, Isaac Adeyemi Babarinde, Naruya Saitou, Hitoshi Suzuki, Manabu Onuma
    • Organizer
      Vth International Wildlife Management Congress (IWMC)
    • Place of Presentation
      札幌コンベンションセンター(北海道・札幌市)
    • Year and Date
      2015-07-26
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research

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Published: 2015-04-16   Modified: 2019-03-29  

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