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Morphogenesis of hitherto-unknown siliceous element in diatom frustule with a combination of cell biological approach and whole genome sequencing

Research Project

Project/Area Number 15K07197
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Biodiversity/Systematics
Research InstitutionBunkyo University

Principal Investigator

Idei Masahiko  文教大学, 教育学部, 教授 (60143624)

Co-Investigator(Kenkyū-buntansha) 長田 敬五  日本歯科大学, 新潟生命歯学部, 教授 (10147829)
佐藤 晋也  福井県立大学, 海洋生物資源学部, 講師 (80709163)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2017: ¥520,000 (Direct Cost: ¥400,000、Indirect Cost: ¥120,000)
Fiscal Year 2016: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2015: ¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Keywords珪藻 / シリカ / 形態形成 / 新奇構造体 / 遺伝子 / Hydrosera / 鱗片 / ゲノム / トランスクリプトーム / ミトコンドリア / 葉緑体 / 殻形成
Outline of Final Research Achievements

The aim of this study is to understand the genetic basis of the morphogenesis of a novel siliceous element found in Hydrosera diatom. We established strains of H. triquetra var. triquetra (strain ID: 33-06) and H. triquetra var. octagona (AH-10) from samples collected from subtropical/temperate islands in Japan. Detailed observations were undertaken to uncover the morphogenesis pattern of the novel elements specifically found from the internal surface of the valves. The
morphogenesis proceeded within SDV localizing beneath the plasma membrane: this process took place sporadically but synchronously within a cell. The formation started from a ring-like pattern centre with a diameter of a few micrometers, which, after a centrifugal development, gave rise to a disk.
Comparative genome and RNA-Seq analyses on the two strains were performed in search for genetic factors responsible for ontogeny. The complete sequences of the organellar genomes had already been recovered from the two strains.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (7 results)

All 2018 2017 2016 2015

All Journal Article (1 results) (of which Peer Reviewed: 1 results) Presentation (6 results) (of which Int'l Joint Research: 5 results)

  • [Journal Article] Valve morphogenesis in Diploneis smithii (Bacillariophyata)2018

    • Author(s)
      Masahiko Idei, Shinya Sato, Nagumo Tamotsu, David G. Mann
    • Journal Title

      Journal of Phycology

      Volume: 54 Issue: 2 Pages: 171-186

    • DOI

      10.1111/jpy.12616

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Presentation] Whole genome sequencing of two closely related but morphologically distinct clones of centric diatom Hydrosera.2017

    • Author(s)
      Sato S, Toyoda K, Osada K, Idei M
    • Organizer
      11th International Phycological Congress. Szczecin, Poland.
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Comparative genomics in two closely related but morphologically distinct clones of centric diatom Hydrosera.2017

    • Author(s)
      Sato S, Toyoda K, Osada K, Idei M
    • Organizer
      The 73rd Fujihara Seminar "Molecular Life of Diatoms". Kobe, Japan.
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Valve morphogenesis in a multipolar diatom genus Hydrosera2016

    • Author(s)
      Masahiko, Idei; Keigo, Osada; Shinya, Sato; Tamotsu, Nagumo & David, G. Mann
    • Organizer
      24th International Diatom Symposium 2016 (Quebec City, Canada)
    • Place of Presentation
      カナダ,ケベック
    • Year and Date
      2016-08-21
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Valve morphogenesis in a multipolar diatom genus Hydrosera2016

    • Author(s)
      Masahiko Idei, Keigo Osada, Shinya Sato, Tamotsu Nagumo & David G. Mann
    • Organizer
      24th International Diatom Symposium
    • Place of Presentation
      Quebec City, Canada
    • Year and Date
      2016-08-21
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Hydrosera属の殻内面を被う新奇鱗片状プレートについて2015

    • Author(s)
      出井雅彦, 長田敬吾, 佐藤晋也, 南雲 保
    • Organizer
      日本珪藻学会第35回研究集会
    • Place of Presentation
      栃木県日光市、日光交流促進センター
    • Year and Date
      2015-10-07
    • Related Report
      2015 Research-status Report
  • [Presentation] Valve and scale-like plate morphogenesis in a multipolar diatom genus Hydrosera2015

    • Author(s)
      Masahiko Idei, Keigo Osada, Shinya Sato, Tamotsu Nagumo & David G. Mann
    • Organizer
      6th European Phycological congress
    • Place of Presentation
      London, UK
    • Year and Date
      2015-08-23
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research

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Published: 2015-04-16   Modified: 2019-03-29  

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