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Virome of the phytopathogenic fungi: metagenomic analysis and the possible utilization

Research Project

Project/Area Number 15K07312
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Plant protection science
Research InstitutionOkayama University

Principal Investigator

Kodno Hideki  岡山大学, 資源植物科学研究所, 准教授 (40263628)

Co-Investigator(Kenkyū-buntansha) 鈴木 信弘  岡山大学, 資源植物科学研究所, 教授 (70206514)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2017: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2016: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2015: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywordsウイルス / 菌類 / メタゲノム解析 / 次世代シークエンサー / 絶対寄生菌 / うどんこ病菌 / クローバー / トティウイルス
Outline of Final Research Achievements

The identification of mycoviruses contributes greatly to understanding of the diversity and evolutionary aspects of viruses. However, virus discovery in obligate biotrophs such as powdery mildews (ascomycetes) and rust fungi (basidiomycetes) is still very limited. In this study, we used a deep sequencing approach to analyze the double-stranded RNA (dsRNA) segments isolated from field-collected samples of powdery mildew fungus-infected red clover plants in Japan. Database searches identified the presence of at least nine novel totivirus (genus Totivirus) in this fungus. Similar totvirus-like sequences are found in public transcriptome shotgun assembly (TSA) libraries of the bean rust fungi. Our data suggests that the horizontal transmission of ancestral totiviruses might have occurred across quite different fungal phyla, between powdery mildews and rust fungi and later evolved within the new host fungus separately.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (16 results)

All 2018 2017 2016 2015 Other

All Int'l Joint Research (1 results) Journal Article (9 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 8 results,  Open Access: 6 results,  Acknowledgement Compliant: 5 results) Presentation (3 results) (of which Invited: 2 results) Book (1 results) Remarks (2 results)

  • [Int'l Joint Research] Northwest A&F University/Chinese Academy of Agricultural Sciences(中国)

    • Related Report
      2017 Annual Research Report
  • [Journal Article] Evidence for a novel negative-stranded RNA mycovirus in the plant pathogenic fungus Fusarium graminearumn.2018

    • Author(s)
      Wang, L., He, H., Chen, X., Qiu, D., Kondo, H.* and Guo, L.*
    • Journal Title

      Virology

      Volume: 528 Pages: 232-240

    • DOI

      10.1016/j.virol.2018.03.008

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A novel insect-infecting alphavirus-like group and its pervasive endogenization into insect genomes.2018

    • Author(s)
      Kondo, H.*, Chiba, S., Maruyama, K., Andika, I.B. and Suzuki, N.
    • Journal Title

      Virus Research

      Volume: 印刷中 Pages: 37-47

    • DOI

      10.1016/j.virusres.2017.11.020

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Phytopathogenic fungus hosts a plant virus: A naturally occurring cross-kingdom viral infection.2017

    • Author(s)
      Andika IB, Wei S, Cao C, Salaipeth L, Kondo H, Sun L.
    • Journal Title

      Proceedings of the National Academy of Science, U S A

      Volume: 114 Issue: 46 Pages: 12267-12272

    • DOI

      10.1073/pnas.1714916114

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Interplays between soil-borne viruses and RNA silencing-mediated antiviral defense in roots.2016

    • Author(s)
      Andika, I.B., Kondo, H., Sun, L.
    • Journal Title

      Frontiers in Microbiology

      Volume: 7 Pages: 1458-1458

    • DOI

      10.3389/fmicb.2016.01458

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Reprint of ”Sequence and phylogenetic analyses of novel totivirus-like double-stranded RNAs from field-collected powdery mildew fungi.”2016

    • Author(s)
      Kondo, H., Hisano, S., Chiba, S., Maruyama K, Andika IB, Toyoda, K., Fujimori, F. and Suzuki, N.
    • Journal Title

      Virus Research

      Volume: 219 Pages: 39-50

    • DOI

      10.1016/j.virusres.2016.05.011

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] A novel betapartitivirus RnPV6 tolerate host RNA silencing but is interfered by its defective- RNAs.2016

    • Author(s)
      Chiba, S., Lin, Y.-H., Zhang, Kondo, H., Kanematsu, S., and Suzuki, N.
    • Journal Title

      Virus Research

      Volume: in press Pages: 62-72

    • DOI

      10.1016/j.virusres.2015.10.017

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Sequence and phylogenetic analyses of novel totivirus-like double-stranded RNAs from field-collected powdery mildew fungi2016

    • Author(s)
      Kondo, H., Hisano, S., Chiba, S., Maruyama K, Andika IB, Toyoda, K., Fujimori, F. and Suzuki, N.
    • Journal Title

      Virus Research

      Volume: 213 Pages: 353-364

    • DOI

      10.1016/j.virusres.2015.11.015

    • NAID

      120006732633

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A capsidless ssRNA virus hosted by an unrelated dsRNA virus2016

    • Author(s)
      Zhang, R., Hisano, S., Tani, A., Kondo, H., Kanematsu, S., and Suzuki, N.
    • Journal Title

      Nature Nicrobiology

      Volume: 1 Issue: 1 Pages: 15001-15001

    • DOI

      10.1038/nmicrobiol.2015.1

    • NAID

      120007004850

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] 宿主ゲノム上に存在する RNA ウイルス感染記録を紐解く2015

    • Author(s)
      近藤秀樹・千葉壮太郎・鈴木信弘
    • Journal Title

      植物感染生理談話会論文集

      Volume: 50 Pages: 133-142

    • Related Report
      2015 Research-status Report
    • Acknowledgement Compliant
  • [Presentation] アカクローバーうどんこ病菌より見いだされた新規トティウイルス2017

    • Author(s)
      近藤秀樹・久野 昌・千葉壮太郎・鈴木信弘
    • Organizer
      平成29年度日本植物病理学会大会
    • Place of Presentation
      盛岡市
    • Year and Date
      2017-04-26
    • Related Report
      2016 Research-status Report
  • [Presentation] Cross-kingdom viral infection between plants and insects: An evolutionary insight into rhabdoviruses2017

    • Author(s)
      Kondo, H.
    • Organizer
      Africa Day 2017
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 分節型ラブドウイルスの感染戦略2016

    • Author(s)
      近藤秀樹
    • Organizer
      第39 回 岡山植物病理セミナー
    • Place of Presentation
      倉敷市
    • Year and Date
      2016-05-21
    • Related Report
      2016 Research-status Report
    • Invited
  • [Book] Genetic diversity of beet necrotic yellow vein virus (Chapter 5). In Rhizomania.2016

    • Author(s)
      Tamada, T., Kondo, H. and Chiba, S. (Eds, Biancardi, E. and Tamada, T.)
    • Publisher
      Springer
    • Related Report
      2016 Research-status Report
  • [Remarks] 岡山大学 資源植物科学研究所 植物・微生物相互作用グループ

    • URL

      http://www.rib.okayama-u.ac.jp/pmi/index-j.html

    • Related Report
      2017 Annual Research Report
  • [Remarks] 岡山大学資源植物科学研究所 植物・微生物相互作用グループ

    • URL

      http://www.rib.okayama-u.ac.jp/pmi/index-j.html

    • Related Report
      2015 Research-status Report

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Published: 2015-04-16   Modified: 2019-03-29  

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