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Analysis of the mechanism of efficient degradation of crystalline substrate by cellulases from Actinomycetes

Research Project

Project/Area Number 15K07383
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Applied biochemistry
Research InstitutionThe University of Tokyo

Principal Investigator

Uchiyama Taku  東京大学, 大学院農学生命科学研究科(農学部), 特任研究員 (70450658)

Co-Investigator(Renkei-kenkyūsha) UCHIHASHI TAKAYUKI  金沢大学, 理工研究領域数物科学系, 准教授 (30326300)
ISHIDA TAKUYA  東京大学, 大学院農学生命科学研究科森林化学研究室, 特任助教 (10714628)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2017: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2016: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2015: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
KeywordsCellulase / Processivity / HS-AFM
Outline of Final Research Achievements

Toward to the realization of “Biorefinery”, we aimed to increase the efficiency of enzymatic saccharification, and attempted to elucidate the enzymatic reaction mechanism involved in cellulases efficient crystalline cellulose degradation. Specifically, we attempted to elucidate such a mechanism through the biochemical experiment, HS-AFM observation, and protein crystal structure analysis of cellulase SaCel6B derived from Actinomycetes. As a result of experiments and observations, we found two amino acid residues involved in efficient crystalline cellulose degradation of cellulase SaCel6B and clarified the importance of these residues. Based on information of such amino acid residues, it could be possible to try to discover cellulases with highly saccharification efficiency or synthesize novel cellulases with high efficiency of saccharification.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (10 results)

All 2017 2016 2015

All Journal Article (4 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 4 results,  Open Access: 4 results,  Acknowledgement Compliant: 3 results) Presentation (6 results) (of which Int'l Joint Research: 1 results)

  • [Journal Article] Crystal structure and identification of a key amino acid for glucose tolerance, substrate specificity and transglycosylation activity of metagenomic β-glucosidase Td2F2.2016

    • Author(s)
      Tomohiko Matsuzawa, Toshinori Jo, Taku Uchiyama, Jenny A Manninen, Takatoshi Arakawa, Kentaro Miyazaki, Shinya Fushinobu, Katsuro Yaoi
    • Journal Title

      FEBS Journal

      Volume: - Issue: 12 Pages: 2340-2353

    • DOI

      10.1111/febs.13743

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Single-molecule imaging analysis of binding, processive movement, and dissociation of cellobiohydrolase Trichoderma reesei Cel6A and its domains on crystalline cellulose2016

    • Author(s)
      Nakamura A, Tasaki T, Ishiwata D, Yamamoto M, Okuni Y, Visootsat A, Maximilien M, Noji H, Uchiyama T, Samejima M, Igarashi K, Iino R
    • Journal Title

      J. Biol. Chem.

      Volume: 291 Issue: 43 Pages: 22404-22413

    • DOI

      10.1074/jbc.m116.752048

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Development of simple random mutagenesis protocol for the protein expression system in Pichia pastoris2016

    • Author(s)
      Tachioka, M., Sugimoto, N., Nakamura, A., Sunagawa, N., Ishida, T., Uchiyama, T., Igarashi, K., and Samejima, M.
    • Journal Title

      Biotechnol. Biofuels

      Volume: 9 Issue: 1 Pages: 199-199

    • DOI

      10.1186/s13068-016-0613-z

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Glucose-tolerant beta-glucosidase retrieved from a Kusasya gravy metagenome2015

    • Author(s)
      Taku Uchiyama, Katsuro Yaoi, Kentaro Miyazaki
    • Journal Title

      Frontiers in Microbiology

      Volume: 6 Pages: 548-548

    • DOI

      10.3389/fmicb.2015.00548

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] セルラーゼのプロセッシビティを中心とした機能解析2017

    • Author(s)
      内山拓、五十嵐圭日子、鮫島正浩
    • Organizer
      第12回バイオマス科学会議
    • Place of Presentation
      東京大学弥生講堂 (東京都・文京区)
    • Year and Date
      2017-01-18
    • Related Report
      2016 Research-status Report
  • [Presentation] セルロース資化性放線菌Cellulomonas fimi由来セルラーゼのプロセッシビティを中心とした機能解析2016

    • Author(s)
      内山拓、内橋貴之、金子哲、中村彰彦、五十嵐圭日子、鮫島正浩
    • Organizer
      日本応用糖質科学会平成28年度大会
    • Place of Presentation
      広島県民文化センターふくやま (広島県・福山市)
    • Year and Date
      2016-09-14
    • Related Report
      2016 Research-status Report
  • [Presentation] 放線菌由来GH6セルラーゼの結晶性基質分解機構の解析2016

    • Author(s)
      内山拓、内橋貴之、金子哲、中村彰彦、石田卓也、五十嵐圭日子、鮫島正浩
    • Organizer
      第30回セルラーゼ研究会大会
    • Place of Presentation
      佐久平プラザ21 (長野県・佐久市)
    • Year and Date
      2016-07-15
    • Related Report
      2016 Research-status Report
  • [Presentation] メタゲノム由来β-グルコシダーゼKs5A7の性状解析2016

    • Author(s)
      内山拓、矢追克郎、宮崎健太郎
    • Organizer
      日本農芸化学会2016年度大会
    • Place of Presentation
      札幌コンベンションセンター(北海道・札幌市)
    • Year and Date
      2016-03-27
    • Related Report
      2015 Research-status Report
  • [Presentation] メタゲノム由来β-グルコシダーゼKs5A7の性状解析2016

    • Author(s)
      内山拓、矢追克郎、宮崎健太郎
    • Organizer
      第11回バイオマス科学会議
    • Place of Presentation
      朱鷺メッセ(新潟県・新潟市)
    • Year and Date
      2016-01-20
    • Related Report
      2015 Research-status Report
  • [Presentation] Processive movement observation of four cellulases from cellulolytic bacteria Cellulomonas fimi2015

    • Author(s)
      Taku Uchiyama, Masahiro Samejima, Kiyohiko Igarashi
    • Organizer
      Gordon Research Conferences
    • Place of Presentation
      Andover (United States)
    • Year and Date
      2015-08-02
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research

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Published: 2015-04-16   Modified: 2019-03-29  

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