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Elucidation of the mecahsim of thermostabilization of thermostable reverse transcriptase

Research Project

Project/Area Number 15K07388
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Applied biochemistry
Research InstitutionKyoto University

Principal Investigator

YASUKAWA KIYOSHI  京都大学, 農学研究科, 教授 (30397559)

Co-Investigator(Kenkyū-buntansha) 兒島 憲二  京都大学, 農学研究科, 助教 (40542759)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2017: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2016: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2015: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
KeywordsリボヌクレアーゼH / RNase H / RNase H2 / 逆転写酵素 / GPMA method / CRISPR/Cas9システム / 変異原性 / MMLV RT / ゲノムプロフィリング法 / 耐熱化機構
Outline of Final Research Achievements

Ribonuclease H (RNase H) is an enzyme that specifically degrades RNA from RNA/DNA hybrids. RNase H has been classified into two major families, type 1 and type 2. Retroviral reverse transcriptase (RT) has DNA polymerase and RNase H activities. In this study, we aimed to elucidate the RNase H and engaged in the following four subjects. (i) The RNase H domain of MMLV RT was prepared and characterized. (ii) The effects of neutral salts and pH on the activity and stability of human RNase H2 were analyzed. (iii) The GPMA method using mouse NIH3T3 cell line instead of E. coli was established. (iv) The RNase H2 knock-out NIH3T3 cell line was established and characterized.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (25 results)

All 2018 2017 2016 2015 Other

All Int'l Joint Research (3 results) Journal Article (5 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 5 results,  Acknowledgement Compliant: 2 results) Presentation (15 results) (of which Int'l Joint Research: 1 results) Book (1 results) Remarks (1 results)

  • [Int'l Joint Research] National Institutes of Health(米国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] バンドン工科大学(インドネシア)

    • Related Report
      2016 Research-status Report
  • [Int'l Joint Research] National Institutes of Health(米国)

    • Related Report
      2015 Research-status Report
  • [Journal Article] Effects of neutral salts and pH on the activity and stability of human RNase H22017

    • Author(s)
      Baba, M., Kojima, K., Nakase, R., Imai, S., Yamasaki, T., Takita, T., Crouch, R.J., Yasukawa, K.
    • Journal Title

      The Journal of Biochemistry

      Volume: 印刷中 Issue: 3 Pages: 211-219

    • DOI

      10.1093/jb/mvx021

    • NAID

      40021326122

    • Related Report
      2017 Annual Research Report 2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] DNA-based mutation assay (GPMA) can be of ppb-order sensitivity for both bacterial and mammalian testers2017

    • Author(s)
      Kumari, P., Gautam, S.G., Baba, M., Tsukiashi, M., Matsuoka, K., Yasukawa, K., Nishigaki, K.
    • Journal Title

      The Journal of Biochemistry

      Volume: 162 Issue: 6 Pages: 395-401

    • DOI

      10.1093/jb/mvx043

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Generation of thermostable Moloney murine leukemia virus reverse transcriptase variants using site saturation mutagenesis library and cell-free protein expression system2017

    • Author(s)
      Katano, Y., Li, T., Baba, M., Nakamura, M., Ito, M., Kojima, K., Takita, T., Yasukawa, K.
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 81 Issue: 12 Pages: 2339-2345

    • DOI

      10.1080/09168451.2017.1394790

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Further increase in thermostability of Moloney murine leukemia virus reverse transcriptase by mutational combination2017

    • Author(s)
      Baba, M., Kakue, R., Leucht, C., Rasor, P., Walch, H., Ladiges, D., Bell, C., Kojima, K., Takita, T., Yasukawa, K.
    • Journal Title

      Protein Eng. Des. Sel.

      Volume: 30 Issue: 8 Pages: 551-557

    • DOI

      10.1093/protein/gzx046

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Preparation and characterization of the RNase H domain of Moloney murine leukemia virus reverse transcriptase2015

    • Author(s)
      Nishimura, K., Yokokawa, K., Hisayoshi, T., Fukatsu, K., Kuze, I., Konishi, A., Mikami, B., Kojima, K., and Yasukawa, K.
    • Journal Title

      Protein Expression and Purification

      Volume: 113 Pages: 44-50

    • DOI

      10.1016/j.pep.2015.04.012

    • NAID

      120005668067

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] Site saturation変異と無細胞タンパク質合成系を用いた耐熱化MMLV 逆転写酵素スクリーニング系の構築2017

    • Author(s)
      李瞳陽、片野裕太、中村実世、馬場美聡、伊東昌章、滝田禎亮、保川清
    • Organizer
      日本農芸化学会2017年度大会
    • Place of Presentation
      京都女子大学
    • Year and Date
      2017-03-17
    • Related Report
      2016 Research-status Report
  • [Presentation] ヒトRNase H2の酵素活性と安定性に与える中性塩とpHの影響2017

    • Author(s)
      馬場美聡,兒島憲二,中瀬理保子,今井翔太,山崎朋美,滝田禎亮,Robert J. Crouch,保川清
    • Organizer
      第64回日本生化学会近畿支部例会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 哺乳動物細胞を用いたGPMA(genome profiling-based mutation assay)法の検討2017

    • Author(s)
      馬場美聡、Parmila Kumari、Sunita Ghimire Gautam、月足元希、松岡浩司、西垣功一、保川清
    • Organizer
      第46回日本環境変異原学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] ヒトリボヌクレアーゼ H2の基質特異性の改変2017

    • Author(s)
      兒島憲二,馬場美聡,杉浦拓也,西村拓人,滝田禎亮,Robert J. Crouch,保川清
    • Organizer
      日本農芸化学会平成29年度関西支部大会(第500回講演会)
    • Related Report
      2017 Annual Research Report
  • [Presentation] 哺乳動物細胞を用いたゲノムプロフィリング法による変異原アッセイ法の検討2017

    • Author(s)
      馬場美聡、Parmila Kumari、Sunita Ghimire Gautam、月足元希、松岡浩司、西垣功一、保川清
    • Organizer
      日本農芸化学会平成29年度関西支部大会(第500回講演会)
    • Related Report
      2017 Annual Research Report
  • [Presentation] ヒトリボヌクレアーゼ H2の基質特異性の改変2017

    • Author(s)
      兒島憲二,馬場美聡,杉浦拓也,西村拓人,滝田禎亮,Robert J. Crouch,保川清
    • Organizer
      2017年度生命科学系合同年次大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 哺乳動物細胞を用いたGPMA (genome profiling-based mutation assay)法の検討2017

    • Author(s)
      馬場美聡、Parmila Kumari、Sunita Ghimire Gautam、月足元希、松岡浩司、西垣功一、保川清
    • Organizer
      2017年度生命科学系合同年次大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] マウス線維芽細胞株NIH3T3 RNase H2遺伝子欠損株の作製2017

    • Author(s)
      月足元希、馬場美聡、兒島憲二、滝田禎亮、保川清
    • Organizer
      2017年度生命科学系合同年次大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 部位特異的変異導入によるヒトRNase H2の基質特異性の改変2017

    • Author(s)
      兒島憲二,馬場美聡,西村拓人,杉浦拓也,滝田禎亮,上原了,Robert J. Crouch,保川清
    • Organizer
      2018年度日本農芸化学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 変異の組み合わせによるモロニ―マウス白血病ウイルス逆転写酵素のさらなる耐熱化2017

    • Author(s)
      馬場美聡, 角江亮太, Christoph Leucht, Peter Rasor, Heiko Walch, Daniel Ladiges, Christian Bell, 兒島憲二, 滝田禎亮, 保川清
    • Organizer
      2018年度日本農芸化学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Effects of neutral salts on catalytic activity and stability of human RNase H22016

    • Author(s)
      Kojima, K., Baba, M., Kojima, K., Nakase, R., Imai, S., Yamasaki, Crouch, R.J., T., Takita, T., Yasukawa, K.
    • Organizer
      RNaseH2016
    • Place of Presentation
      京都大学楽友会館
    • Year and Date
      2016-09-06
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] ヒトRNase H2の活性と安定性に対する塩の影響2016

    • Author(s)
      兒島憲二、馬場美聡、中瀬理保子、今井翔太、山﨑朋美、Robert J. Crouch、滝田禎亮、保川清
    • Organizer
      日本農芸化学会関西支部第495回講演会
    • Place of Presentation
      大阪府立大学
    • Related Report
      2016 Research-status Report
  • [Presentation] Nase H2の酵素化学的性質の解析2016

    • Author(s)
      馬場美聡、兒島憲二、中瀬理保子、今井翔太、山崎朋美、Robert J. Crouch、滝田禎亮、保川清
    • Organizer
      日本農芸化学会関西支部第496回講演会
    • Place of Presentation
      滋賀県立大学
    • Related Report
      2016 Research-status Report
  • [Presentation] Effects of neutral salts and pH on catalytic activity of human RNase H22016

    • Author(s)
      Baba, M., Kojima, K., Nakase, R., Imai, S., Yamasaki, T., Crouch, R.J., Takita, T.,Yasukawa, K.
    • Organizer
      JSBBA Student Forum
    • Place of Presentation
      神戸大学
    • Related Report
      2016 Research-status Report
  • [Presentation] MMLV 逆転写酵素のRNase Hドメインの性状解析2015

    • Author(s)
      横川貫太、西村耕作、深津浩佑、久世郁実、久好哲郎、小西篤、三上文三、兒島憲二、保川清
    • Organizer
      第62回日本生化学会近畿支部例会
    • Place of Presentation
      立命館大学びわこ・くさつキャンパス
    • Year and Date
      2015-05-16
    • Related Report
      2015 Research-status Report
  • [Book] エッセンシャルタンパク質工学2018

    • Author(s)
      老川典夫、大島敏久、保川清、三原久明、宮原郁子
    • Total Pages
      210
    • Publisher
      講談社
    • ISBN
      9784061538993
    • Related Report
      2017 Annual Research Report
  • [Remarks] 酵素化学研究室ホームページ 業績

    • URL

      http://www.enzchem.kais.kyoto-u.ac.jp/gyouseki.html

    • Related Report
      2016 Research-status Report

URL: 

Published: 2015-04-16   Modified: 2022-06-06  

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