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Function, structure, and application of extremely halophilic 2-deoxy-D-ribose-5-phosphate aldolase

Research Project

Project/Area Number 15K07395
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Applied biochemistry
Research InstitutionKagawa University

Principal Investigator

Sakuraba Haruhiko  香川大学, 農学部, 教授 (90205823)

Co-Investigator(Renkei-kenkyūsha) OHSHIMA Toshihisa  大阪工業大学, 工学部・生命工学科, 教授 (10093345)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2017: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2016: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2015: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords高度好塩菌 / アルドラーゼ / 2-デオキシリボース-5-リン酸アルドラーゼ / アーキア / 抗高脂血症剤 / 結晶構造解析 / アルデヒド / Halorhabdus utahensis / Haloarcula japonica / archaea / X線結晶構造解析
Outline of Final Research Achievements

2-Deoxy-D-ribose-5-phosphate aldolase (DERA) catalyzes the aldol reaction between two aldehydes and is useful for the production of a variety of stereo-specific materials. However, practical application of the enzyme from a mesophilic organism such as Escherichia coli is still limited by its poor resistance to high aldehyde concentrations. The enzymes from extreme halophilic archaea generally retain considerable activity in organic solvents and this may overcome the problem of DERA utilization. Therefore, we overexpressed the gene encoding DERA from extreme halophilic archaeon in Escherichia coli. The enzyme was highly resistant to a high concentration of acetaldehyde under which E. coli DERA is completely inactivated. The enzyme exhibited much higher activity at ordinary temperature than hyperthermophilic DERAs. Our results suggest that the extremely halophilic DERA has high potential to serve as a biocatalyst in organic syntheses.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (18 results)

All 2018 2017 2016 2015

All Journal Article (9 results) (of which Peer Reviewed: 9 results,  Acknowledgement Compliant: 4 results,  Open Access: 1 results) Presentation (8 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Crystal structure of the NADP and tartrate-bound complex of L-serine 3-dehydrogenase from the hyperthermophilic archaeon Pyrobaculum calidifontis2018

    • Author(s)
      Kazunari Yoneda, Haruhiko Sakuraba, Tomohiro Araki, Toshihisa Ohshima
    • Journal Title

      Extremophiles

      Volume: 22 Issue: 3 Pages: 395-405

    • DOI

      10.1007/s00792-018-1004-0

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of the novel amino-acid racemase isoleucine 2-epimerase from Lactobacillus buchneri2017

    • Author(s)
      Junji Hayashi, Yuta Mutaguchi, Yume Minemura, Noriko Nakagawa, Kazunari Yoneda, Taketo Ohmori, Toshihisa Ohshima, Haruhiko Sakuraba
    • Journal Title

      Acta Crystallographica section D

      Volume: 73 Issue: 5 Pages: 428-437

    • DOI

      10.1107/s2059798317005332

    • NAID

      130007628792

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure-Based Engineering of an Artificially Generated NADP+-Dependent D-Amino Acid Dehydrogenase2017

    • Author(s)
      Junji Hayashi, Tomonari Seto, Hironaga Akita, Masahiro Watanabe, Tamotsu Hoshino, Kazunari Yoneda, Toshihisa Ohshima, Haruhiko Sakuraba
    • Journal Title

      Applied and Environmental Microbiology

      Volume: - Issue: 11

    • DOI

      10.1128/aem.00491-17

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Unique coenzyme binding mode of hyperthermophilic archaeal sn-glycerol-1-phosphate dehydrogenase from Pyrobaculum calidifontis2016

    • Author(s)
      Junji Hayashi, Kaori Yamamoto, Kazunari Yoneda, Toshihisa Ohshima, Haruhiko Sakuraba
    • Journal Title

      Proteins

      Volume: 84 Issue: 12 Pages: 1786-1796

    • DOI

      10.1002/prot.25161

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] First characterization of extremely halophilic 2-deoxy- D-ribose-5-phosphate aldolase2016

    • Author(s)
      Tatsuya Ohshida, Junji Hayashi, Takenori Satomura, Ryushi Kawakam, Toshihisa Ohshima, Haruhiko Sakuraba
    • Journal Title

      Protein Expression and Purification,

      Volume: 126 Pages: 62-68

    • DOI

      10.1016/j.pep.2016.05.009

    • NAID

      120006493382

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Crystal Structures of a Hyperthermophilic Archaeal Homoserine Dehydrogenase Suggest a Novel Cofactor Binding Mode for Oxidoreductases2015

    • Author(s)
      Junji Hayashi, Shota Inoue, Kwang Kim, Kazunari Yoneda, Yutaka Kawarabayashi, Toshihisa Ohshima, and Haruhiko Sakuraba
    • Journal Title

      Scientific Reports

      Volume: 5 Issue: 1 Pages: 11674-11674

    • DOI

      10.1038/srep11674

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Identification of a novel amino acid racemase from a hyperthermophilic archaeon Pyrococcus horikoshii OT-3 induced by D-amino acids2015

    • Author(s)
      Ryushi Kawakami, Taketo Ohmori, Haruhiko Sakuraba, Toshihisa Ohshima
    • Journal Title

      Amino Acids

      Volume: 47 Issue: 8 Pages: 1579-1587

    • DOI

      10.1007/s00726-015-2001-6

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Journal Article] A novel NAD(P)H-dependent carbonyl reductase specifically expressed in the thyroidectomized chicken fatty liver: catalytic properties and crystal structure2015

    • Author(s)
      Yudai Fukuda, Takeki Sone, Haruhiko Sakuraba, Tomohiro Araki, Toshihisa Ohshima, Takeshi Shibata, Kazunari Yoneda
    • Journal Title

      FEBS Journal

      Volume: 282 Issue: 20 Pages: 3918-3928

    • DOI

      10.1111/febs.13385

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Journal Article] Dye-linked D-amino acid dehydrogenases: biochemical characteristics and applications in biotechnology2015

    • Author(s)
      Takenori Satomura, Haruhiko Sakuraba, Shin-ichiro Suye, Toshihisa Ohshima
    • Journal Title

      Applied Microbiology and Biotechnology

      Volume: 99 Issue: 22 Pages: 9337-9347

    • DOI

      10.1007/s00253-015-6944-z

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Presentation] 高度好塩菌Haloarcula japonica由来2-デオキシリボース5-リン酸アルドラーゼに関する研究2017

    • Author(s)
      大志田 達也; 林 順司; 里村武範; 川上竜巳; 大島敏久; 櫻庭春彦
    • Organizer
      日本農芸化学会2017年度大会
    • Place of Presentation
      京都
    • Year and Date
      2017-03-17
    • Related Report
      2016 Research-status Report
  • [Presentation] 超好熱性細菌Thermotoga maritima由来アスパラギン酸キナーゼ/ホモセリンデヒドロゲナーゼ融合酵素(AK/HseDH)の機能解析2017

    • Author(s)
      古場康平; 林 順司; 安部展洋; 米田一成; 大島敏久; 櫻庭春彦
    • Organizer
      日本農芸化学会2017年度大会
    • Place of Presentation
      京都
    • Year and Date
      2017-03-17
    • Related Report
      2016 Research-status Report
  • [Presentation] 超好熱アーキアPyrobaculum aerophilum由来galactose-1-phosphate uridylyltransferaseの構造解析2017

    • Author(s)
      花川大地; 林 順司; 米田一成; 大島敏久; 櫻庭春彦
    • Organizer
      日本農芸化学会2017年度大会
    • Place of Presentation
      京都
    • Year and Date
      2017-03-17
    • Related Report
      2016 Research-status Report
  • [Presentation] 高度好塩菌Haloarcula japonica由来2-デオキシリボース5-リン酸アルドラーゼに関する研究2017

    • Author(s)
      大志田 達也、 林 順司、 里村武範、 川上竜巳、 大島敏久、 櫻庭春彦
    • Organizer
      日本農芸化学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 高度好塩菌 Haloarcula japonica 由来 2- デオキシリボース -5- リン酸アルドラーゼに 関する研究2016

    • Author(s)
      大志田達也; 林 順司; 里村武範; 川上竜巳; 大島敏久; 櫻庭春彦
    • Organizer
      日本農芸化学会2016年度中四国支部大会
    • Place of Presentation
      高知
    • Year and Date
      2016-09-15
    • Related Report
      2016 Research-status Report
  • [Presentation] Thermostable NADP-dependent D-amino acid dehydrogenase created by site-directed mutation: characteristics and application2015

    • Author(s)
      Toshihisa Ohshima, Hironaga Akita, Katsumi Doi, Haruhiko Sakuraba
    • Organizer
      18th Japanese-German Workshop Enzyme Technology
    • Place of Presentation
      京都
    • Year and Date
      2015-09-14
    • Related Report
      2015 Research-status Report
  • [Presentation] 超好熱ア-キア由来NAD(P)依存性 L-セリン 3-脱水素酵素の分子特性2015

    • Author(s)
      米田一成, 櫻庭春彦, 荒木朋洋, 大島敏久
    • Organizer
      日本ビタミン学会第67回大会
    • Place of Presentation
      奈良
    • Year and Date
      2015-06-05
    • Related Report
      2015 Research-status Report
  • [Presentation] 超好熱アーキア由来ホモセリンデヒドロゲナーゼが示す新奇な補酵素結合様式2015

    • Author(s)
      櫻庭春彦, 林 順司, 井上翔太, 大島敏久
    • Organizer
      ビタミンB研究委員会 第440回研究協議会
    • Place of Presentation
      奈良
    • Year and Date
      2015-06-04
    • Related Report
      2015 Research-status Report
  • [Patent(Industrial Property Rights)] アルドラーゼおよびその用途2016

    • Inventor(s)
      櫻庭春彦、大志田達也、大島敏久
    • Industrial Property Rights Holder
      櫻庭春彦、大志田達也、大島敏久
    • Industrial Property Rights Type
      特許
    • Filing Date
      2016-03-14
    • Related Report
      2015 Research-status Report

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Published: 2015-04-16   Modified: 2019-03-29  

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