• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Cell biological studies on behavior of autolytic enzymes that control heartwood formation in trees

Research Project

Project/Area Number 15K07508
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Wood science
Research InstitutionTokyo University of Agriculture and Technology

Principal Investigator

Satoshi Nakaba  東京農工大学, (連合)農学研究科(研究院), 准教授 (40627709)

Co-Investigator(Renkei-kenkyūsha) TAKATA Naoki  森林総合研究所, 森林バイオ研究センター, 主任研究員 (90605544)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2017: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2016: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2015: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords心材形成 / 放射柔細胞 / 細胞死 / 自己分解酵素 / ショットガンプロテオーム解析 / 遺伝子発現解析 / 形質転換体 / ポプラ / ドロノキ / nano-LC-MS/MS
Outline of Final Research Achievements

In the present study, we showed radial variation of the content of proteins in ray parenchyma cells in sapwood of Populus suaveolens by shotgun proteomic analysis. In addition, we found that contents of several proteases increase towards inner part of sapwood. This result suggests that these proteases might be involved in autolysis in the process of cell death in ray parenchyma cells. Then, we showed radial variation of gene expressions of these proteases in ray parenchyma cells by real-time PCR analysis. Moreover, we made transgenic plants of P. tremula x P. tremuloides to understand expression and localization of xylem cysteine peptidase (XCP), which is a kind of important autolytic enzyme in programmed cell death of short-lived tracheary element. Then, we showed localization of the expression of genes of XCP in ray parenchyma cells in these transgenic plants.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (28 results)

All 2018 2017 2016 2015 Other

All Journal Article (7 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 7 results,  Acknowledgement Compliant: 6 results) Presentation (17 results) (of which Int'l Joint Research: 6 results,  Invited: 1 results) Book (2 results) Remarks (2 results)

  • [Journal Article] Changes in the morphology and functions of vacuoles during the death of ray parenchyma cells in Cryptomeria japonica2018

    • Author(s)
      Arakawa, I., Funada, R., Nakaba, S.
    • Journal Title

      Journal of Wood Science

      Volume: 印刷中 Issue: 3 Pages: 177-185

    • DOI

      10.1007/s10086-017-1692-6

    • NAID

      40021568605

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Responses of ray parenchyma cells to wounding differ between earlywood and latewood in the sapwood of Cryptomeria japonica2017

    • Author(s)
      Nakaba, S., Morimoto, H., Arakawa, I., Yamagishi, Y., Nakada, R., Funada, R.
    • Journal Title

      Trees

      Volume: 31 Issue: 1 Pages: 31-39

    • DOI

      10.1007/s00468-016-1452-z

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Cavitation of intercellular spaces is critical to establishment of hydraulic properties of compression wood of Chamaecyparis obtusa seedlings2016

    • Author(s)
      Satoshi Nakaba, Asami Hirai, Kayo Kudo, Yusuke Yamagishi, Kenichi Yamane, Katsushi Kuroda, Widyanto Dwi Nugroho, Peter Kitin, Ryo Funada
    • Journal Title

      Annals of Botany

      Volume: 117 Issue: 3 Pages: 457-463

    • DOI

      10.1093/aob/mcv195

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Agatharesinol biosynthesis-related changes of ray parenchyma in sapwood sticks of Cryptomeria japonica during cell death2016

    • Author(s)
      Satoshi Nakaba, Izumi Arakawa, Hikaru Morimoto, Nobumasa Bito, Takanori Imai, Ryogo Nakada, Ryo Funada
    • Journal Title

      Planta

      Volume: 243 Issue: 5 Pages: 1225-1236

    • DOI

      10.1007/s00425-016-2473-y

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Effect of epicuticular wax crystals on the localization of artificially deposited sub-micron carbon-based aerosols on needles of Cryptomeria japonica2016

    • Author(s)
      Satoshi Nakaba, Kenichi Yamane, Mie Fukahori, Widyanto Dwi Nugroho, Masahiro Yamaguchi, Katsushi Kuroda, Yuzou Sano, I. Wuled Lenggoro, Takeshi Izuta, Ryo Funada
    • Journal Title

      Journal of Plant Research

      Volume: -

    • NAID

      40020924803

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Localized cooling of stems induces latewood formation and cambial dormancy during seasons of active cambium in conifers2016

    • Author(s)
      Shahanara Begum, Kayo Kudo, Yugo Matsuoka, Satoshi Nakaba, Yusuke Yamagishi, Eri Nabeshima, Md. Hasnat Rahman, Widyanto Dwi Nugroho, Yuichiro Oribe, Hyun-O Jin, Ryo Funada
    • Journal Title

      Annals of Botany

      Volume: 117 Issue: 3 Pages: 465-477

    • DOI

      10.1093/aob/mcv181

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Relationship between the earlywood-to-latewood transition and changes in levels of stored starch around the cambium in locally heated stems of the evergreen conifer Chamaecyparis pisifera2016

    • Author(s)
      Md Hasnat Rahman, Shahanara Begum, Satoshi Nakaba, Yusuke Yamagishi, Kayo Kudo, Eri Nabeshima, Widyanto Dwi Nugroho, Yuichiro Oribe, Ryo Funada
    • Journal Title

      Trees-Structure and Function

      Volume: - Issue: 5 Pages: 1619-1630

    • DOI

      10.1007/s00468-016-1395-4

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] オニグルミ樹幹におけるフェノール含有量の放射方向での変動2018

    • Author(s)
      宮田晴香、橋田 光、小林 真、吉田俊也、高橋直樹、船田 良、半 智史
    • Organizer
      第68回日本木材学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] カラマツ放射柔細胞の分化過程とデンプンおよび脂質の貯蔵開始のタイミングとの関連性2018

    • Author(s)
      荒川 泉、安江 恒、船田 良、半 智史
    • Organizer
      第68回日本木材学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] ドロノキ放射柔細胞の細胞死に関連するプロテアーゼの遺伝子発現解析2017

    • Author(s)
      半 智史、高田直樹、高橋大輔、中田了五、上村松生、船田 良
    • Organizer
      第67回日本木材学会大会
    • Place of Presentation
      九州大学(福岡県・福岡市)
    • Year and Date
      2017-03-17
    • Related Report
      2016 Research-status Report
  • [Presentation] カラマツ放射柔細胞の分化過程とデンプン貯蔵機能発現の関連性2017

    • Author(s)
      荒川 泉、安江 恒、船田 良、半 智史
    • Organizer
      第67回日本木材学会大会
    • Place of Presentation
      九州大学(福岡県・福岡市)
    • Year and Date
      2017-03-17
    • Related Report
      2016 Research-status Report
  • [Presentation] スギ辺材部小片の含水率の低下が放射柔細胞の細胞死過程に与える影響2017

    • Author(s)
      三ツ屋佑樹、荒川 泉、船田 良、半 智史
    • Organizer
      第67回日本木材学会大会
    • Place of Presentation
      九州大学(福岡県・福岡市)
    • Year and Date
      2017-03-17
    • Related Report
      2016 Research-status Report
  • [Presentation] オニグルミの木部柔細胞における心材形成に伴う細胞内容物の変化2017

    • Author(s)
      宮田晴香、荒川 泉、安江 恒、船田 良、半 智史
    • Organizer
      第67回日本木材学会大会
    • Place of Presentation
      九州大学(福岡県・福岡市)
    • Year and Date
      2017-03-17
    • Related Report
      2016 Research-status Report
  • [Presentation] Relationship between cytological changes and biosynthesis of agatharesinol in ray parenchyma in sapwood sticks of Cryptomeria japonica during cell death2017

    • Author(s)
      Satoshi Nakaba, Izumi Arakawa, Hikaru Morimoto, Nobumasa Bito, Takanori Imai, Ryogo Nakada, Ryo Funada
    • Organizer
      IUFRO Conference Division 5 Forest Products
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Relationship between vacuole rupture and morphological change in nuclei in ray parenchyma cells during heartwood formation in Cryptomeria japonica2017

    • Author(s)
      Izumi Arakawa, Ryo Funada, Satoshi Nakaba
    • Organizer
      IUFRO Conference Division 5 Forest Products
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ショットガンプロテオミクスを用いたドロノキ放射柔細胞の放射方向におけるタンパク質変動の解析2017

    • Author(s)
      半 智史、高橋大輔、梅澤泰史、春日 純、高田直樹、中田了五、上村松生、船田 良
    • Organizer
      第81回日本植物学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Initiation of starch accumulation in ray parenchyma cells in Larix kaempferi2017

    • Author(s)
      Izumi Arakawa, Koh Yasue, Ryo Funada, Satoshi Nakaba
    • Organizer
      The 9th Pacific Regional Wood Anatomy Conference(PRWAC)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Changes over time in ray parenchyma cells after wounding in Cryptomeria japonica2017

    • Author(s)
      Satoshi Nakaba, Hikaru Morimoto, Izumi Arakawa, Yusuke Yamagishi, Ryogo Nakada, Ryo Funada
    • Organizer
      IUFRO Tokyo 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ドロノキ木部放射柔細胞の放射方向におけるタンパク質変動のショットガンプロテオーム解析2016

    • Author(s)
      半 智史、高橋大輔、梅澤泰史、春日 純、高田直樹、中田了五、上村松生、船田 良
    • Organizer
      第66回日本木材学会大会
    • Place of Presentation
      名古屋大学(愛知県・名古屋市)
    • Year and Date
      2016-03-27
    • Related Report
      2015 Research-status Report
  • [Presentation] スギ放射柔細胞の細胞死過程における液胞の崩壊と核の形態変化2016

    • Author(s)
      荒川 泉、船田 良、半 智史
    • Organizer
      第66回日本木材学会大会
    • Place of Presentation
      名古屋大学(愛知県・名古屋市)
    • Year and Date
      2016-03-27
    • Related Report
      2015 Research-status Report
  • [Presentation] スギ辺材部小片を用いた異なる温度条件における放射柔細胞の細胞死過程の解析2016

    • Author(s)
      三ツ屋佑樹、清水友梨、今井貴規、荒川 泉、船田 良、半 智史
    • Organizer
      第66回日本木材学会大会
    • Place of Presentation
      名古屋大学(愛知県・名古屋市)
    • Year and Date
      2016-03-27
    • Related Report
      2015 Research-status Report
  • [Presentation] 木部構造の異なる広葉樹の傷害組織における着色物質の局在2016

    • Author(s)
      山西悠友、保坂路人、船田 良、半 智史
    • Organizer
      第66回日本木材学会大会
    • Place of Presentation
      名古屋大学(愛知県・名古屋市)
    • Year and Date
      2016-03-27
    • Related Report
      2015 Research-status Report
  • [Presentation] Analysis of localization of heartwood substances in the pith region of a hardwood, Robinia pseudoacacia var. inermis, by fluorescence microspectroscopy2015

    • Author(s)
      Satoshi Nakaba, Yusuke Yamagishi, Yuzou Sano, Ryo Funada
    • Organizer
      The second East-Asia Microscopy Conference
    • Place of Presentation
      姫路商工会議所(兵庫県・姫路市)
    • Year and Date
      2015-10-25
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Analysis of heartwood formation by fluorescence microspectroscopy2015

    • Author(s)
      Satoshi Nakaba
    • Organizer
      International Microscopy Workshop on Plant Sciences 2015
    • Place of Presentation
      兵庫県立大学(兵庫県・姫路市)
    • Year and Date
      2015-10-24
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research / Invited
  • [Book] Secondary xylem biology2016

    • Author(s)
      Ryo Funada, Yusuke Yamagishi, Shahanara Begum, Kayo Kudo, Eri Nabeshima, Widyanto Dwi Nugroho, Yuichiro Oribe, Satoshi Nakaba
    • Total Pages
      397
    • Publisher
      Elsevier
    • Related Report
      2015 Research-status Report
  • [Book] Plant Microtechniques and Protocols2015

    • Author(s)
      Satoshi Nakaba, Peter Kitin, Yusuke Yamagishi, Shahanara Begum, Kayo Kudo, Widyanto Dwi Nugroho, Ryo Funada
    • Total Pages
      576
    • Publisher
      Springer
    • Related Report
      2015 Research-status Report
  • [Remarks] 東京農工大学 農学部 環境資源科学科 木質資源特性科学研究室

    • URL

      http://web.tuat.ac.jp/~tokusei/

    • Related Report
      2017 Annual Research Report
  • [Remarks] 東京農工大学 農学部 環境資源科学科 木質資源特性科学研究室

    • URL

      http://web.tuat.ac.jp/~tokusei/

    • Related Report
      2016 Research-status Report 2015 Research-status Report

URL: 

Published: 2015-04-16   Modified: 2019-03-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi