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Elucidation of the molecular mechanism producing diterpenes with various tetracyclic skeletons in plant cells

Research Project

Project/Area Number 15K07991
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Natural medicines
Research InstitutionUniversity of Toyama

Principal Investigator

Yamamura Yoshimi  富山大学, 大学院医学薬学研究部(薬学), 助教 (30464027)

Co-Investigator(Renkei-kenkyūsha) LEE Jung-Bum  富山大学, 大学院医学薬学研究部(薬学), 助教 (40332655)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2017: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2016: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2015: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywords植物二次代謝 / ジテルペン / チトクロームP450 / 環化酵素 / 有用物質生産 / エリシター / RNA-Seq / RNA-seq
Outline of Final Research Achievements

To elucidate the diterpene biosynthetic machinery of scopadulcic acid B (SDB), which are known for their unique tetracyclic skeleton in Scoparia dulcis, we performed an RNA-seq analysis. We found diterpene synthases genes including a putative syn-copalyl diphosphate synthase (SdCPS2) and a kaurene synthase-like (SdKSL1) genes. Besides them, more than 90 full-length of cytochrome P450 (CYP450) genes were also discovered. The expression analyses showed selected CYP450s associated with their expression pattern of SdCPS2 and SdKSL1, suggesting that CYP450 candidates involved diterpene modification. Functional analysis of the SdCPS2 revealed that SdCPS2 was suggested to be syn-CPS in S. dulcis. SdCPS2 represents the first predicted gene to produce syn-copalyl diphosphate in dicots. In addition, SdKSL1 potentially contributes to the SDB biosynthetic pathway.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (11 results)

All 2018 2017 2016 2015

All Journal Article (2 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 2 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (9 results) (of which Int'l Joint Research: 4 results)

  • [Journal Article] Characterization of ent-kaurene synthase and kaurene oxidase involved in gibberellin biosynthesis from Scoparia dulcis2018

    • Author(s)
      Yamamura Yoshimi、Taguchi Yukari、Ichitani Kei、Umebara Io、Ohshita Ayako、Kurosaki Fumiya、Lee Jung-Bum
    • Journal Title

      J. Nat. Med.

      Volume: 72 Issue: 2 Pages: 456-463

    • DOI

      10.1007/s11418-017-1168-4

    • NAID

      40021511349

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Elucidation of terpenoid metabolism in Scoparia dulcis by RNA-seq analysis2017

    • Author(s)
      Yoshimi Yamamura, Fumiya Kurosaki & Jung-Bum Lee
    • Journal Title

      Scientific Reports

      Volume: - Issue: 1

    • DOI

      10.1038/srep43311

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] Functional characterization of syn-copalyl diphosphate synthase from Scoparia dulcis.2017

    • Author(s)
      Yamamura Y, Umebara I, Kurosaki F, Lee JB
    • Organizer
      The 13th International Meeting on Biosynthesis, Function and Synthetic Biology of Isoprenoids (TERPNET 2017)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] RNA-Seq解析による薬用植物スコパリアのジテルペン代謝の解明2017

    • Author(s)
      山村良美,黒崎文也,李 貞範
    • Organizer
      日本生薬学会第64回年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 薬用植物スコパリアにおけるジテルペン環化酵素の機能解析2017

    • Author(s)
      梅原依男,山村良美,黒崎文也,李 貞範
    • Organizer
      日本生薬学会第64回年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 薬用植物Scoparia dulcis由来ジテルペンの骨格形成に関与する酵素遺伝子の機能解析.2016

    • Author(s)
      梅原依男,山村良美,黒崎文也,李 貞範.
    • Organizer
      植物化学調節学会第51回大会
    • Place of Presentation
      高知大学物部キャンパス
    • Year and Date
      2016-10-28
    • Related Report
      2016 Research-status Report
  • [Presentation] Characterization of two genes for the biosynthesis of gibberellin in Scoparia dulcis.2016

    • Author(s)
      Yamamura Y, Taguchi Y, Ichitani K, Kurosaki F, Lee JB.
    • Organizer
      The First International Symposium on Toyama-Asia-Africa Pharmaceutical Network (TAA-Pharm Symposium)
    • Place of Presentation
      Toyama International Conference Center, Japan
    • Year and Date
      2016-09-12
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Functional identification of two diterpene cyclases from Scoparia dulcis.2016

    • Author(s)
      Umebara I, Yamamura Y, Kurosaki F, Lee JB.
    • Organizer
      The First International Symposium on Toyama-Asia-Africa Pharmaceutical Network (TAA-Pharm Symposium)
    • Place of Presentation
      Toyama International Conference Center, Japan
    • Year and Date
      2016-09-12
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Scoparia dulcis由来ジベレリン生合成酵素群の機能解析.2016

    • Author(s)
      田口裕香里,市谷 圭,李 貞範,山村良美,黒崎文也.
    • Organizer
      第34回日本植物細胞分子生物学会(上田)大会
    • Place of Presentation
      信州大学 繊維学部
    • Year and Date
      2016-09-01
    • Related Report
      2016 Research-status Report
  • [Presentation] Discovery of two diterpene cyclases involved in the scopadulane-type diterpene biosynthesis in Scoparia dulcis.2016

    • Author(s)
      Yamamura Y, Umebara I, Kurosaki F, Lee JB.
    • Organizer
      9th Joint Natural Products Conference 2016
    • Place of Presentation
      Tivoli Hotel & Congress Center, Copehagen, Denmark
    • Year and Date
      2016-07-24
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Prediction of genes involved in terpenoid diversity in Scoparia dulcis L.2015

    • Author(s)
      Yoshimi Yamamura and Jung-Bum Lee
    • Organizer
      11th International Congress of Plant Molecular Biology
    • Place of Presentation
      Iguazu Falls, Brazil
    • Year and Date
      2015-10-25
    • Related Report
      2015 Research-status Report

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Published: 2015-04-16   Modified: 2019-03-29  

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