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Generation of unnatural amino acids using enzymes for the biosynthesis of antitubercular antibiotic D-cycloserine

Research Project

Project/Area Number 15K07997
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Natural medicines
Research InstitutionHiroshima University

Principal Investigator

Matoba Yasuyuki  広島大学, 医歯薬保健学研究科(薬), 准教授 (90363051)

Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2015: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywords抗生物質 / 微生物薬品学 / 構造生物学 / 酵素 / 非天然型アミノ酸 / 光学分割 / ヘムタンパク質 / 共鳴ラマンスペクトル / X線結晶構造解析 / D-サイクロセリン / 変異体
Outline of Final Research Achievements

Our group has recently cloned a gene cluster containing the biosynthetic genes for an antituberculosis antibiotic, D-cycloserine (D-CS) from D-CS-producing Streptomyces lavendulae. The aim of this study is to generate unnatural amino acids by using the enzymes in the D-CS-biosynthetic pathway. Based on the crystal structures of DcsD and DcsG, previously determined by us, mutational analyses were performed to identify the important residues for the catalytic activity and the substrate preference. In addition, crystal structure of DcsA was determined using the single anomalous dispersion method. Catalytic mechanism of DcsA was proposed based on the structural, mutational, and resonance Raman spectroscopic analyses.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (22 results)

All 2018 2017 2016 2015

All Journal Article (10 results) (of which Peer Reviewed: 10 results,  Acknowledgement Compliant: 2 results,  Open Access: 3 results) Presentation (12 results) (of which Int'l Joint Research: 2 results)

  • [Journal Article] Expression of Genes Involved in Bacteriocin Production and Self-Resistance in Lactobacillus brevis 174A Is Mediated by Two Regulatory Proteins.2018

    • Author(s)
      Noda M, Miyauchi R, Danshiitsoodol N, Matoba Y, Kumagai T, Sugiyama M.
    • Journal Title

      Appl. Environ. Microbiol.

      Volume: 84 Issue: 7

    • DOI

      10.1128/aem.02707-17

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Two types of phenoloxidases contribute to hemolymph PO activity in spiny Lobster.2018

    • Author(s)
      Taro Masuda*, Tatsuki Kawauchi, Yuya Yata, Yasuyuki Matoba, Haruhiko Toyohara
    • Journal Title

      Food Chemistry

      Volume: 260 Pages: 166-173

    • DOI

      10.1016/j.foodchem.2018.03.110

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystallographic and Mutational Analyses of Cystathionine β-Synthase in the H2S-synthetic Gene Cluster in Lactobacillus plantarum2017

    • Author(s)
      Y Matoba, T Yoshida, H Izuhara-Kihara, M Noda, M Sugiyama
    • Journal Title

      Protein Sci.

      Volume: 26 Issue: 4 Pages: 763-783

    • DOI

      10.1002/pro.3123

    • Related Report
      2017 Annual Research Report 2016 Research-status Report
    • Peer Reviewed
  • [Journal Article] Activation mechanism of the Streptomyces tyrosinase assisted by the caddie protein2017

    • Author(s)
      Matoba Y, Kihara S, Muraki Y, Bando N, Yoshitsu H, Kuroda T, Sakaguchi M, Kayama K, Tai H, Hirota S, Ogura T, Sugiyama M
    • Journal Title

      Biochemistry

      Volume: 56 Issue: 41 Pages: 5593-5603

    • DOI

      10.1021/acs.biochem.7b00635

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural analysis of the STAT1:STAT2 heterodimer revealed the mechanism of Sendai virus C protein-mediated blockade of type 1 interferon signaling2017

    • Author(s)
      Oda Kosuke、Oda Takashi、Matoba Yasuyuki、Sato Mamoru、Irie Takashi、Sakaguchi Takemasa
    • Journal Title

      Journal of Biological Chemistry

      Volume: 292 Issue: 48 Pages: 19752-19766

    • DOI

      10.1074/jbc.m117.786285

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Anti-Obesity Effect of Pediococcus pentosaceus LP28 on Overweight Subjects: a Randomized, Double-Blind, Placebo-Controlled Clinical Trial2016

    • Author(s)
      F Higashikawa, M Noda, T Awaya, N Danshiitsoodol, Y Matoba, T Kumagai, M Sugiyama
    • Journal Title

      Eur. J. Clin. Nutr.

      Volume: 70 Issue: 5 Pages: 582-587

    • DOI

      10.1038/ejcn.2016.17

    • Related Report
      2016 Research-status Report
    • Peer Reviewed
  • [Journal Article] 非天然型アミノ酸D-サイクロセリン生合成酵素の結晶構造2016

    • Author(s)
      的場 康幸
    • Journal Title

      バイオサイエンスとインダストリー

      Volume: 74 Pages: 510-513

    • NAID

      40021006497

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] The structural and mutational analyses of O-ureido-L-serine synthase necessary for D-cycloserine biosynthesis2015

    • Author(s)
      Uda N, Matoba Y, Oda K, Kumagai T, Sugiyama M.
    • Journal Title

      FEBS J.

      Volume: 282 Issue: 20 Pages: 3929-3944

    • DOI

      10.1111/febs.13386

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] High level heterologous production of D-cycloserine by Escherichia coli2015

    • Author(s)
      Kumagai T, Ozawa T, Tanimoto M, Noda M, Matoba Y, Sugiyama M.
    • Journal Title

      Appl. Environ. Microbiol.

      Volume: 81 Issue: 22 Pages: 7881-7887

    • DOI

      10.1128/aem.02187-15

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structural basis of the inhibition of STAT1 activity by Sendai virus C protein2015

    • Author(s)
      Oda K, Matoba Y, Irie T, Kawabata R, Fukushi M, Sugiyama M, Sakaguchi T.
    • Journal Title

      J. Virol.

      Volume: 89 Issue: 22 Pages: 11487-11499

    • DOI

      10.1128/jvi.01887-15

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] 細菌由来シスタチオニンβ-シンターゼの性質と構造、および、その阻害剤開発2017

    • Author(s)
      安武 千晶, 吉田 智喜、伊豆原-木原 久枝, 黒田 照夫, 杉山 政則, 的場 康幸
    • Organizer
      第90回日本細菌学会総会
    • Place of Presentation
      仙台国際センター
    • Year and Date
      2017-03-19
    • Related Report
      2016 Research-status Report
  • [Presentation] Elucidation of Catalytic Mechanism of Tyrosinase by Using Time-Resolved Analysis2017

    • Author(s)
      Yasuyuki Matoba
    • Organizer
      感応性化学種が拓く新物質科学 第2回国際シンポジウム
    • Place of Presentation
      広島大学 学士会館 レセプションホール
    • Year and Date
      2017-03-06
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Catalytic mechanism of a heme-binding arginine hydroxylase responsible for the biosynthesis of D-cycloserine2017

    • Author(s)
      Shimotani N, Furukawa Y, Uda N, Kuroda T, Yanagisawa S, Ogura T, Mizohata E, Inoue T, Kamachi T, Yoshizawa K, Matoba Y
    • Organizer
      第27回金属の関与する生体関連反応シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] Crystallographic and spectroscopic studies of DcsA, a heme-binding arginine hydroxylase responsible for the biosynthesis of D-cycloserine2016

    • Author(s)
      Yasuyuki Matoba
    • Organizer
      感応性化学種が拓く新物質科学 第4回若手国際シンポジウム
    • Place of Presentation
      大阪大学工学研究科 サントリーメモリアルホール
    • Year and Date
      2016-12-12
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] D-サイクロセリン合成酵素DcsGの構造生物学的研究およびホモシステインの定量と光学分割への応用2016

    • Author(s)
      工藤 真子, 的場 康幸, 宇田 成利, 熊谷 孝則, 黒田 照夫, 杉山 政則
    • Organizer
      第55回日本薬学会・日本薬剤師会・日本病院薬剤師会 中国四国支部学術大会
    • Place of Presentation
      就実大学
    • Year and Date
      2016-11-05
    • Related Report
      2016 Research-status Report
  • [Presentation] D-サイクロセリン生合成に関わる新規ヘムタンパク質DcsAの構造と性質2016

    • Author(s)
      的場 康幸, 古川 裕貴, 柳澤 幸子, 宇田 成利, 熊谷 孝則, 小倉 尚志, 杉山 政則
    • Organizer
      第68回日本生物工学会大会
    • Place of Presentation
      富山国際会議場
    • Year and Date
      2016-09-28
    • Related Report
      2016 Research-status Report
  • [Presentation] 時間分割解析を用いた二核銅酵素チロシナーゼの反応機構の解明2016

    • Author(s)
      的場 康幸
    • Organizer
      感応性化学種が拓く新物質化学 第6回公開シンポジウム
    • Place of Presentation
      広島大学 学士会館 レセプションホール
    • Year and Date
      2016-05-20
    • Related Report
      2016 Research-status Report
  • [Presentation] D-サイクロセリン合成酵素DcsGの構造生物学的研究2015

    • Author(s)
      的場 康幸, 宇田 成利, 熊谷 孝則, 杉山 政則
    • Organizer
      第67回日本生物工学会大会
    • Place of Presentation
      城山観光ホテル, 鹿児島市
    • Year and Date
      2015-10-26
    • Related Report
      2015 Research-status Report
  • [Presentation] D-サイクロセリン生合成に関わるアルギニンヒドロキシラーゼ2015

    • Author(s)
      古川 裕貴,的場 康幸,柳澤 幸子,宇田 成利,工藤 真子,熊谷 孝則,小倉 尚志,杉山 政則
    • Organizer
      第48回酸化反応討論会
    • Place of Presentation
      同志社大学寒梅館, 京都市
    • Year and Date
      2015-10-23
    • Related Report
      2015 Research-status Report
  • [Presentation] D-サイクロセリン生合成に関わるアルギニン水酸化酵素の構造と性質2015

    • Author(s)
      古川 裕貴,的場 康幸,柳澤 幸子,宇田 成利,工藤 真子,熊谷 孝則,小倉 尚志,杉山 政則
    • Organizer
      第9回バイオ関連化学シンポジウム
    • Place of Presentation
      熊本大学工学部・黒髪南地区キャンパス
    • Year and Date
      2015-09-10
    • Related Report
      2015 Research-status Report
  • [Presentation] cysJ およびcysK遺伝子の二重破壊大腸菌株の使用によるD-サイクロセリン生産性の向上2015

    • Author(s)
      熊谷 孝則, 小澤 智紀, 的場 康幸, 野田 正文, 杉山 政則
    • Organizer
      2015年度日本放線菌学会大会
    • Place of Presentation
      富山国際会議場
    • Year and Date
      2015-09-07
    • Related Report
      2015 Research-status Report
  • [Presentation] D-サイクロセリン生合成に関わるアルギニンヒドロキシラーゼの構造化学的研究2015

    • Author(s)
      古川 裕貴,的場 康幸,柳澤 幸子,宇田 成利,工藤 真子,熊谷 孝則,小倉 尚志,杉山 政則
    • Organizer
      第25回金属の関与する生体関連反応シンポジウム
    • Place of Presentation
      長崎大学文教スカイホール
    • Year and Date
      2015-05-30
    • Related Report
      2015 Research-status Report

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Published: 2015-04-16   Modified: 2019-03-29  

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