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Electron microscopic analysis of lipid clusters in the inner leaflet of plasma membrane

Research Project

Project/Area Number 15K08167
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field General anatomy (including histology/embryology)
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Murate Motohide  国立研究開発法人理化学研究所, 開拓研究本部, 研究員 (30311369)

Project Period (FY) 2015-04-01 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2017: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2016: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2015: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywords細胞膜 / 脂質二重層 / ホスファチジルセリン / ホスファチジルエタノールアミン / 免疫電子顕微鏡法 / ショウジョウバエ / スクランブラーゼ / フリッパーゼ / アポトーシス / 培養細胞 / スフィンゴミエリン / 非対称分布
Outline of Final Research Achievements

We examined transbilayer distribution of phosphatidylethanolamine (PE) and phosphatidylserine (PS) in the plasma membrane of normal and lipid transfer protein-depleted Drosophila cells by freeze-fracture replica immunoelectron microscopy. Our results indicate that both lipids were considerably localized in the outer leaflet, in addition to the inner leaflet of normal cell plasma membranes, whereas they distributed almost restrictedly in the inner leaflet of mammalian cell plasma membranes as reported by our previous studies. This remarkable distribution of PS in the plasma membranes was disturbed in flippase-depleted cells, but it was not affected in scramblase-depleted cells. Futhermore, the depletion of neither scrambrase nor flippase influenced the transbilayer distribution of PE. These results suggest that the mechanism of formation and maintenance of lipid distribution between two leaflets is different in each species.

Academic Significance and Societal Importance of the Research Achievements

本研究により明らかにされたショウジョウバエ細胞における細胞膜脂質二重層の内外層における脂質の対称分布は、これまで哺乳類細胞を用いて解析され、また認識されてきた非対称分布とは大きく異なり、細胞膜の脂質分布の多様性を示すとともに、細胞膜研究に対する新たな認識を提供することができた。また、脂質の分布に影響を及ぼすと考えられている酵素を欠損させても、すべての脂質の分布に影響を及ぼすわけではないことを明らかにし、脂質分布の形成と維持の機構に関する知見を提供することができた。

Report

(5 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Research-status Report
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (23 results)

All 2019 2018 2017 2016 2015 Other

All Journal Article (11 results) (of which Int'l Joint Research: 6 results,  Peer Reviewed: 11 results,  Open Access: 7 results,  Acknowledgement Compliant: 6 results) Presentation (9 results) (of which Int'l Joint Research: 4 results,  Invited: 2 results) Remarks (3 results)

  • [Journal Article] Formation of tubules and helical ribbons by ceramide phosphoethanolamine-containing membranes.2019

    • Author(s)
      Inaba T., Murate M., Tomishige N., Lee Y.-F., Hullin-Matsuda F., Pollet B., Humbert N., Mely Y., Sako Y., Greimel P. and Kobayashi T.
    • Journal Title

      Scientific Reports

      Volume: 9 Issue: 1 Pages: 5812-5812

    • DOI

      10.1038/s41598-019-42247-1

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Protein probes to visualize sphingomyelin and ceramide.2018

    • Author(s)
      Hullin-Matsuda F., Murate M. and Kobayashi T.
    • Journal Title

      Chemistry and Physics of Lipids

      Volume: 216 Pages: 132-141

    • DOI

      10.1016/j.chemphyslip.2018.09.002

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Acute accumulation of free cholesterol induces the degradation of perilipin 2 and Rab18-dependent fusion of ER and lipid droplets in cultured human hepatocytes.2016

    • Author(s)
      Makino A, Hullin-Matsuda F, Murate M, Abe M, Tomishige N, Fukuda M, Yamashita S, Fujimoto T, Vidal H, Lagarde M, Delton I, Kobayashi T.
    • Journal Title

      Mol Biol Cell

      Volume: 27 Issue: 21 Pages: 3293-3304

    • DOI

      10.1091/mbc.e15-10-0730

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Probing phosphoethanolamine-containing lipids in membranes with duramycin/cinnamycin and aegerolysin proteins.2016

    • Author(s)
      Hullin-Matsuda F., Makino A., Murate M., Kobayashi T.
    • Journal Title

      Biochimie

      Volume: 130 Pages: 81-90

    • DOI

      10.1016/j.biochi.2016.09.020

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] A novel spingomyeling/cholesterol specific probe reveals the dynamics of the membrane domain during virus and in Nieman-Pick type C2016

    • Author(s)
      Makino, A., Sako, Y. et al.
    • Journal Title

      FASEB J.

      Volume: 31 Issue: 4 Pages: 1301-1322

    • DOI

      10.1096/fj.201500075r

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Phospholipase Cβ1 induces membrane tubulation and is involved in caveolae formation.2016

    • Author(s)
      Inaba T, Kishimoto T, Murate M, Tajima T, Sakai S, Abe M, Makino A, Tomishige N, Ishitsuka R, Ikeda Y, Takeoka S, Kobayashi T.
    • Journal Title

      Proc Natl Acad Sci USA

      Volume: 113 Issue: 28 Pages: 7834-7839

    • DOI

      10.1073/pnas.1603513113

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Revisiting transbilayer distribution of lipids in the plasma membrane.2016

    • Author(s)
      Murate M,, Kobayashi T.
    • Journal Title

      Chem. Phys. Lipids

      Volume: 194 Pages: 58-71

    • DOI

      10.1016/j.chemphyslip.2015.08.009

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Visualization of the heterogeneous membrane distribution of sphingomyelin associated with cytokinesis, cell polarity, and sphingolipidosis2015

    • Author(s)
      Makino A, Abe M, Murate M, Inaba T, Yilmaz N, Hullin-Matsuda F, Kishimoto T, Schieber NL, Taguchi T, Arai H, Anderluh G, Parton RG, Kobayashi T.
    • Journal Title

      FASEB J

      Volume: 29 Issue: 2 Pages: 477

    • DOI

      10.1096/fj.13-247585

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Transbilayer distribution of lipids at nano scale.2015

    • Author(s)
      Murate M, Abe M, Kasahara K, Iwabuchi K, Umeda M, Kobayashi T
    • Journal Title

      J Cell Sci

      Volume: 128 Pages: 1627-1638

    • DOI

      10.1242/jcs.163105

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Evaluation of aegerolysins as novel tools to detect and visualize ceramide phosphoethanolamine, a major sphingolipid in invertebrates2015

    • Author(s)
      Bhat HB, Ishitsuka R, Inaba T, Murate M, Abe M, Makino A, Kohyama-Koganeya A, Nagao K, Kurahashi A, Kishimoto T, Tahara M, Yamano A, Nagamune K, Hirabayashi Y, Juni N, Umeda M, Fujimori F, Nishibori K, Yamaji-Hasegawa A, Greimel P, Kobayashi T.
    • Journal Title

      FASEB J

      Volume: 29(9) Issue: 9 Pages: 3920-34

    • DOI

      10.1096/fj.15-272112

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] CARTS biogenesis requires VAP-lipid transfer protein complexes functioning at the endoplasmic reticulum-Golgi interface.2015

    • Author(s)
      Wakana Y., Kotake R., Oyama N., Murate M., Kobayashi T., Arasaki K., Inoue H., Tagaya M.
    • Journal Title

      Mol. Biol Cell

      Volume: 26 Issue: 25 Pages: 4686-4699

    • DOI

      10.1091/mbc.e15-08-0599

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] Phospholipase C beta1 induces membrane tubulation and is involved in caveolae formation.2018

    • Author(s)
      Kobayashi T., Inaba T., Kishimoto T., Murate M., Tajima T., Abe M., Makino A., Tomishige N. and Takeoka S.
    • Organizer
      第91回日本生化学会大会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Transbilayer distribution of lipids in the plasma membrane revealed by immunoelectron microscopy.2017

    • Author(s)
      Murate M.
    • Organizer
      University of Strasbourg-RIKEN Workshop on Membrane Lipidology
    • Related Report
      2017 Research-status Report
    • Int'l Joint Research
  • [Presentation] Transbilayer distribution of lipids in the plasma membrane revealed by immuno-electron microscopy.2016

    • Author(s)
      Murate M.
    • Organizer
      第57回International Conference on the Bioscience of Lipids
    • Place of Presentation
      フランス シャモニー
    • Year and Date
      2016-09-08
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Phospholipase C beta 1 induces membrane tubulation and is involved in caveolae formation.2016

    • Author(s)
      Inaba T., Kishimoto T., Murate M., Tajima T., Sakai S., Abe M., Makino A., Tomishige N., Ishitsuka R., Ikeda Y., Takeoka S., Kobayashi T.
    • Organizer
      第57回International Conference on the Bioscience of Lipids
    • Place of Presentation
      フランス シャモニー
    • Year and Date
      2016-09-05
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] 細胞膜の脂質二重層を構成する各種の脂質が示す非対称分布とその破綻2015

    • Author(s)
      村手源英, 阿部充宏, 笠原浩二, 岩渕和久, 梅田真郷, 小林俊秀
    • Organizer
      第38回日本分子生物学会年会、第88回日本生化学会大会合同大会
    • Place of Presentation
      神戸ポートアイランド(兵庫県神戸市)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] Transbilayer lipid distribution in the plasma membrane at nano scale.2015

    • Author(s)
      Murate M., Abe M., Kasahara K., Iwabuchi K., Umeda M., Kobayashi T.
    • Organizer
      第11回GERLI Lipidomics Meeting
    • Place of Presentation
      ビショフスハイム、フランス
    • Year and Date
      2015-10-25
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] 細胞膜の脂質二重層を構成する様々な脂質が示す非対称分布の電子顕微鏡レベルでの解析2015

    • Author(s)
      村手源英, 阿部充宏, 笠原浩二, 岩渕和久, 梅田真郷, 小林俊秀
    • Organizer
      第67回日本細胞生物学会年会
    • Place of Presentation
      タワーホール船堀(東京都江戸川区)
    • Year and Date
      2015-06-30
    • Related Report
      2015 Research-status Report
  • [Presentation] Transbilayer and lateral distribution of lipids in the plasma membrane at nano scale.2015

    • Author(s)
      Murate M., Abe M., Kasahara K., Iwabuchi K., Umeda M., Kobayashi T.
    • Organizer
      第10回スフィンゴテラピィ研究会
    • Place of Presentation
      ホテルアローレ(石川県加賀市)
    • Year and Date
      2015-06-16
    • Related Report
      2015 Research-status Report
  • [Presentation] 細胞膜の内外層における構成脂質のナノメートルレベルでの局在解析2015

    • Author(s)
      村手源英, 阿部充宏, 岩渕和久, 梅田真郷, 小林俊秀
    • Organizer
      第57回日本脂質生化学会年会
    • Place of Presentation
      一橋大学一橋講堂(東京都千代田区)
    • Year and Date
      2015-05-28
    • Related Report
      2015 Research-status Report
  • [Remarks] 理研 脂質の統合的理解

    • URL

      http://lipidology.riken.jp/index.html

    • Related Report
      2018 Annual Research Report
  • [Remarks] 理化学研究所 脂質の統合的理解 研究プロジェクト

    • URL

      http://lipidology.riken.jp/index.html

    • Related Report
      2017 Research-status Report
  • [Remarks] 理化学研究所 脂質の統合的理解

    • URL

      http://lipidology.riken.jp/index.html

    • Related Report
      2015 Research-status Report

URL: 

Published: 2015-04-16   Modified: 2020-03-30  

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