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Physiological role of mitochondrial tRNA modification

Research Project

Project/Area Number 15K08178
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field General physiology
Research InstitutionKumamoto University

Principal Investigator

Wei Fan-Yan  熊本大学, 大学院生命科学研究部(医), 准教授 (90555773)

Research Collaborator Mohri Satoshi  
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2017: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2016: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2015: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords代謝 / ミトコンドリア / RNA / 修飾 / RNA修飾 / エネルギー代謝 / tRNA / 翻訳
Outline of Final Research Achievements

In this study, we report that Cdk5 regulatory subunit-associated protein 1 (Cdk5rap1) is responsible for 2-methylthio (ms2) modifications of mammalian mt-tRNAs for Ser(UCN), Phe, Tyr and Trp codons. Deficiency in ms2 modification markedly impaired mitochondrial protein synthesis, which resulted in respiratory defects in Cdk5rap1 knockout (KO) mice. The KO mice were highly susceptive to stress-induced mitochondrial remodelling and exhibited accelerated myopathy and cardiac dysfunction under stressed conditions. Furthermore, we demonstrate that the ms2 modifications of mt-tRNAs were sensitive to oxidative stress and were reduced in patients with mitochondrial disease. These findings highlight the fundamental role of ms2 modifications of mt-tRNAs in mitochondrial protein synthesis and their pathological consequences in mitochondrial disease.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (23 results)

All 2018 2017 2016 2015 Other

All Journal Article (12 results) (of which Int'l Joint Research: 6 results,  Peer Reviewed: 12 results,  Open Access: 6 results,  Acknowledgement Compliant: 6 results) Presentation (8 results) (of which Int'l Joint Research: 1 results,  Invited: 3 results) Book (1 results) Remarks (1 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Cdk5rap1-mediated 2-methylthio-N6-isopentenyladenosine modification is absent from nuclear-derived RNA species2017

    • Author(s)
      Fakruddin Md.、Wei Fan Yan、Emura Shohei、Matsuda Shigeru、Yasukawa Takehiro、Kang Dongchon、Tomizawa Kazuhito
    • Journal Title

      Nucleic Acids Research

      Volume: 45 Issue: 20 Pages: 11954-11961

    • DOI

      10.1093/nar/gkx819

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Synthesis of L-cysteine derivatives containing stable sulfur isotopes and application of this synthesis to reactive sulfur metabolome2017

    • Author(s)
      Ono K, Jung M, Zhang T, Tsutsuki H, Sezaki H, Ihara H, Wei FY, Tomizawa K, Akaike T, Sawa T.
    • Journal Title

      Free Radic Biol Med

      Volume: 106 Pages: 69-79

    • DOI

      10.1016/j.freeradbiomed.2017.02.023

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Tctex-1 controls ciliary resorption by regulating branched actin polymerization and endocytosis2017

    • Author(s)
      Saito M, Otsu W, Hsu KS, Chuang JZ, Yanagisawa T, Shieh V, Kaitsuka T, Wei FY, Tomizawa K, Sung CH.
    • Journal Title

      EMBO Rep.

      Volume: 18 Issue: 8 Pages: 1460

    • DOI

      10.15252/embr.201744204

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Cysteinyl-tRNA synthetase governs cysteine polysulfidation and mitochondrial bioenergetics2017

    • Author(s)
      Akaike Takaaki、、、Nishida Motohiro(4)、、、、、、Fujii Shigemoto(20)、、、Motohashi Hozumi(26)
    • Journal Title

      Nature Communications

      Volume: 8 Issue: 1 Pages: 1177-1177

    • DOI

      10.1038/s41467-017-01311-y

    • NAID

      120007134656

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Mtu1-mediated thiouridine formation of mitochondrial tRNAs is required for mitochondrial translation and is involved in reversible infantile liver injury2016

    • Author(s)
      Wu, Y., Wei, F. Y., Kawarada, L., Suzuki, T., Araki, K., Komohara, Y., Fujimura, A., Kaitsuka, T., Takeya, M., Oike, Y., Suzuki, T., Tomizawa, K.
    • Journal Title

      PLoS genetics

      Volume: 12 Issue: 9 Pages: e1006355-e1006355

    • DOI

      10.1371/journal.pgen.1006355

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Evolving specificity of tRNA 3-methyl-cytidine-32 (m3C32) modification: a subset of tRNAsSer requires N6-isopentenylation of A37.2016

    • Author(s)
      Arimbasseri AG, Iben J, Wei FY, Rijal K, Tomizawa K, Hafner M, Maraia RJ.
    • Journal Title

      RNA

      Volume: 22 Issue: 9 Pages: 1400-1410

    • DOI

      10.1261/rna.056259.116

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] HDAC9 regulates the alternative lengthening of telomere (ALT) pathway via the formation of ALT-associated PML bodies.2016

    • Author(s)
      Mohd. Raeed Jamiruddin, Taku Kaitsuka, Farzana Hakim, Atsushi Fujimura, Fan-Yan Wei, Hisato Saitoh, Kazuhito Tomizawa
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 481 Issue: 1-2 Pages: 25-30

    • DOI

      10.1016/j.bbrc.2016.11.026

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Lack of tRNA-i6A modification causes mitochondrial-like metabolic deficiency in S. pombe by limiting activity of cytosolic tRNATyr, not mito-tRNA.2016

    • Author(s)
      Lamichhane TN, Arimbasseri AG, Rijal K, Iben JR, Wei FY, Tomizawa K, Maraia RJ.
    • Journal Title

      RNA

      Volume: 22 Issue: 4 Pages: 583-596

    • DOI

      10.1261/rna.054064.115

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Oxytocin Protects against Stress-Induced Cell Death in Murine Pancreatic β-Cells.2016

    • Author(s)
      Watanabe S, Wei FY, Matsunaga T, Matsunaga N, Kaitsuka T, Tomizawa K.
    • Journal Title

      Sci Rep.

      Volume: 6 Issue: 1 Pages: 25185-25185

    • DOI

      10.1038/srep25185

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Cdk5rap1-mediated 2-methylthio modification of mitochondrial tRNAs governs protein translation and contributes to myopathy in mice and humans.2015

    • Author(s)
      Wei FY, Zhou B, Suzuki T, Miyata K, Ujihara Y, Horiguchi H, Takahashi N, Xie P, Michiue H, Fujimura A, Kaitsuka T, Matsui H, Koga Y, Mohri S, Suzuki T, Oike Y, Tomizawa K.
    • Journal Title

      Cell Metab

      Volume: 21 Issue: 3 Pages: 413-6

    • DOI

      10.1016/j.cmet.2015.01.019

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A cautionary tale: the non-causal association between type 2 diabetes risk SNP, rs7756992, and levels of non-coding RNA, CDKAL1-v1.2015

    • Author(s)
      Locke JM, Wei FY, Tomizawa K, Weedon MN, Harries LW.
    • Journal Title

      Diabetologia

      Volume: 58 Issue: 4 Pages: 745-748

    • DOI

      10.1007/s00125-015-3508-9

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Possible role of cortactin phosphorylation by protein kinase Cα in actin-bundle formation at growth cone.2015

    • Author(s)
      Yamada H, Kikuchi T, Masumoto T, Wei FY, Abe T, Takeda T, Nishiki T, Tomizawa K, Watanabe M, Matsui H, Takei K.
    • Journal Title

      Biology of the Cell

      Volume: 107 Issue: 9 Pages: 319-330

    • DOI

      10.1111/boc.201500032

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Presentation] 疾患における代謝産物の解析および代謝制御に基づく革新的医療基盤技術の創出2018

    • Author(s)
      魏 范研
    • Organizer
      第95回日本生理学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Regulation of cytoplasmic proteostress by mitochondrial tRNA modification and its pathological implication2017

    • Author(s)
      魏 范研
    • Organizer
      第94回日本生理学会大会
    • Place of Presentation
      静岡県浜松市
    • Year and Date
      2017-03-27
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] マウス個体発生におけるミトコンドリアtRNA修飾の役割2017

    • Author(s)
      魏 范研
    • Organizer
      第30回モロシヌス研究会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] ミトコンドリアtRNAタウリン修飾によるタンパク質恒常性ネットワークの制御2017

    • Author(s)
      魏 范研
    • Organizer
      日本RNA学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] tRNA修飾による生体機能制御及び酸素応答とのクロストーク2016

    • Author(s)
      魏 范研
    • Organizer
      フォーラムインドージン
    • Place of Presentation
      熊本県熊本市
    • Year and Date
      2016-10-28
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] Mitochondrial tRNA modification controls mitochondria-cytoplasm protein homeostasis and is involved in the pathogenesis of mitochondrial disease2016

    • Author(s)
      魏 范研
    • Organizer
      tRNA 2016
    • Place of Presentation
      韓国済州市
    • Year and Date
      2016-09-07
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Functional characterization of FTSJ1, a X-linked mental retardation-related gene2016

    • Author(s)
      Yu Nagayoshi, Fan-Yan Wei, Taku Kaitsuka, Suzuki Takeo, Suzuki Tsutomu and Kazuhito Tomizawa
    • Organizer
      第93回日本生理学会大会
    • Place of Presentation
      札幌
    • Year and Date
      2016-03-22
    • Related Report
      2015 Research-status Report
  • [Presentation] tRNA修飾異常によるX染色体連鎖性精神遅滞の 発症分子メカニズムの解析2015

    • Author(s)
      魏 范研,、永芳 友、平田 翔児、鈴木 健夫、鈴木 勉、富澤 一仁
    • Organizer
      第17回日本RNA学会
    • Place of Presentation
      札幌
    • Year and Date
      2015-07-17
    • Related Report
      2015 Research-status Report
  • [Book] 細胞工学2015

    • Author(s)
      魏范研、富澤一仁
    • Total Pages
      3
    • Publisher
      秀潤社
    • Related Report
      2015 Research-status Report
  • [Remarks]

    • URL

      http://kumamoto-physiology.jp

    • Related Report
      2017 Annual Research Report
  • [Patent(Industrial Property Rights)] ミトコンドリアtRNA修飾の検出法2016

    • Inventor(s)
      魏范研、富澤一仁
    • Industrial Property Rights Holder
      熊本大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2016-255808
    • Filing Date
      2016-12-28
    • Related Report
      2016 Research-status Report

URL: 

Published: 2015-04-16   Modified: 2019-03-29  

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