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Research for single cell expression analysis and epigenetic mechanism using RNA-FISH analyses

Research Project

Project/Area Number 15K08330
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Human genetics
Research InstitutionShinshu University

Principal Investigator

Wakui Keiko  信州大学, 学術研究院医学系, 講師 (50324249)

Co-Investigator(Kenkyū-buntansha) 河村 理恵  信州大学, 医学部, 助教(特定雇用) (20735534)
高野 亨子  信州大学, 学術研究院医学系, 助教 (70392420)
福嶋 義光  信州大学, 医学部, 特任教授 (70273084)
Co-Investigator(Renkei-kenkyūsha) KOSHO Tomoki  信州大学, 医学部附属病院, 准教授 (90276311)
SAITOH Shinji  名古屋市立大学, 医学(系)研究科(研究院) (00281824)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2017: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2016: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2015: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywords1細胞解析 / 相同染色体 / RNA-FISH / エピジェネティクス / X染色体不活化 / 1細胞解析 / エピジェネティック
Outline of Final Research Achievements

Genetic diseases are usually caused by mutation of each responsible gene, but some genetic diseases are caused by epigenetic mechanism.
This research aimed at obtaining new knowledge of pathogenesis through single cell expression analysis using RNA-FISH method which allow distinguish the homologous chromosomes.
As one of the target diseases, we selected the structural X chromosome abnormalities in female. We succeeded in 3-color RNA-DNA FISH method using RNA probe for XIST gene, DNA probes for the reference region and for the target region mapped all on the X chromosome, which can detect X chromosome inactivation pattern and normal/abnormal X chromosome simultaneously in each individual nucleus. And the results of this study for the carrier females as the subjects confirmed the usefulness of this procedure, since the X chromosome inactivation pattern were consistent with the result using the another X chromosome inactivation analysis.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (4 results)

All 2017 2016 2015

All Journal Article (1 results) (of which Peer Reviewed: 1 results,  Open Access: 1 results) Presentation (3 results) (of which Int'l Joint Research: 1 results)

  • [Journal Article] CTCF deletion syndrome: Clinical features and epigenetic delineation2017

    • Author(s)
      Hori I, Kawamura R, Nakabayashi K, Watanabe H, Higashimoto K, Tomikawa J, Ieda D, Ohashi K, Negishi Y, Hattori A, Sugio Y, Wakui K, Hata K, Soejima H, Kurosawa K, Saitoh S
    • Journal Title

      Journal of Medical Genetics

      Volume: 54 Issue: 12 Pages: 836-842

    • DOI

      10.1136/jmedgenet-2017-104854

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] CTCF遺伝子欠失を認めた2女児の臨床的および遺伝学的検討2016

    • Author(s)
      堀いくみ, 河村理恵, 中林一彦, 家田大輔, 大橋圭, 根岸豊, 服部文子, 杉尾嘉嗣, 涌井敬子, 黒澤健司, 秦健一郎, 副島英伸, 齋藤伸治
    • Organizer
      第39回日本小児遺伝学会学術集会
    • Place of Presentation
      慶應義塾大学三田北館ホール
    • Year and Date
      2016-12-09
    • Related Report
      2016 Research-status Report
  • [Presentation] Xp21欠失女性症例における不活化X染色体解析  ―構造異常X染色体を識別するRNA/DNA-FISH解析―2015

    • Author(s)
      河村 理恵,伊波若葉,福嶋 義光,涌井 敬子
    • Organizer
      日本人類遺伝学会第60回大会
    • Place of Presentation
      京王プラザホテル(新宿・東京)
    • Year and Date
      2015-10-14
    • Related Report
      2015 Research-status Report
  • [Presentation] Establishment of a single-cell RNA/DNA-FISH method for detecting inactivation patterns of structural X chromosome abnormalities2015

    • Author(s)
      Rie KAWAMURA, Wakaba IHA, Yoshimitsu FUKUSHIMA, Keiko WAKUI
    • Organizer
      第10回European Cytogenetics Conference
    • Place of Presentation
      ストラスブール(フランス)
    • Year and Date
      2015-07-04
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research

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Published: 2015-04-16   Modified: 2019-03-29  

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