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Control of B cell differentiation by manipulation of signal dynamics

Research Project

Project/Area Number 15K08534
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Immunology
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

SHINOHARA HISAAKI  国立研究開発法人理化学研究所, 統合生命医科学研究センター, 上級研究員 (10391971)

Research Collaborator Inoue Kentarou  
Hoffman Alexander  
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,940,000 (Direct Cost: ¥3,800,000、Indirect Cost: ¥1,140,000)
Fiscal Year 2017: ¥390,000 (Direct Cost: ¥300,000、Indirect Cost: ¥90,000)
Fiscal Year 2016: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Fiscal Year 2015: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
KeywordsB細胞シグナル / 反応速度数理モデル / 分子活性動態 / シグナル活性動態 / B細胞 / 細胞分化 / シグナルネットワーク / シグナル動態 / 数理モデル解析 / 遺伝子発現解析 / シグナル動態制御 / 分化決定システム
Outline of Final Research Achievements

In the BCR signal, the elements necessary for activation of NF-κB were indeterminate. The applicant investigated physiologically and clarified that TAK1 is essential for B cell activation and cell differentiation (Immunol Cell Biol. 2016, Genes Cells. 2016). In addition, molecular based analysis showed that TAK1-associated molecule TAB 2/3 is essential for activation of NF-κB (FEBS Lett. 2016).
Applicant quantitatively measured cell input / output and using mathematical model analysis, revealed that IKK's steep activity kinetics are controlled by "positive Feedback mechanism" (NPJ Syst Biol. 2016). In parallel with these, I find a ubiquitinating enzyme IAP controls the activity dynamics of ERK and IKK using gene expression analysis and reaction rate mathematical model (Sci Rep. 2016). Furthermore, it is clarified that epigenetic control by BCR stimulation is also mediated by NF-κB (submitting).

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (12 results)

All 2016 Other

All Int'l Joint Research (2 results) Journal Article (8 results) (of which Int'l Joint Research: 6 results,  Peer Reviewed: 8 results,  Open Access: 6 results,  Acknowledgement Compliant: 6 results) Presentation (2 results) (of which Int'l Joint Research: 1 results,  Invited: 1 results)

  • [Int'l Joint Research] カリフォルニア大学ロサンゼル ス校/テキサス大学オースティン校/ミシガン大学(米国)

    • Related Report
      2016 Research-status Report
  • [Int'l Joint Research] マックス・デルブリュック・セ ンター(ドイツ)

    • Related Report
      2016 Research-status Report
  • [Journal Article] LRRK1 is critical in the regulation of B-cell responses and CARMA1-dependent NF-κB activation.2016

    • Author(s)
      Morimoto K, Baba Y, Shinohara H, Kang S, Nojima S, Kimura T, Ito D, Yoshida Y, Maeda Y, Sarashina-Kida H, Nishide M, Hosokawa T, Kato Y, Hayama Y, Kinehara Y, Okuno T, Takamatsu H, Hirano T, Shima Y, Narazaki M, Kurosaki T, Toyofuku T, Kumanogoh A.
    • Journal Title

      Scientific Reports

      Volume: 6 Issue: 1 Pages: 25738-25738

    • DOI

      10.1038/srep25738

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Stimulus-Dependent Inhibitor of Apoptosis Protein Expression Prolongs the Duration of B Cell Signalling.2016

    • Author(s)
      Shinohara H, Inoue K, Yumoto N, Nagashima T, Okada-Hatakeyama M.
    • Journal Title

      Scientific Reports

      Volume: 6 Issue: 1 Pages: 27706-27706

    • DOI

      10.1038/srep27706

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] TAK1 adaptor proteins, TAB2 and TAB3, link the signalosome to B-cell receptor-induced IKK activation.2016

    • Author(s)
      Shinohara H, Yasuda T, Kurosaki T.
    • Journal Title

      FEBS Letters.

      Volume: 590 Issue: 18 Pages: 3264-3269

    • DOI

      10.1002/1873-3468.12342

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Negative role of TAK1 in marginal zone B-cell development incidental to NF-κB noncanonical pathway activation.2016

    • Author(s)
      Shinohara H, Kurosaki T.
    • Journal Title

      Immunology and Cell Biology

      Volume: 94 Issue: 9 Pages: 821-829

    • DOI

      10.1038/icb.2016.44

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Oscillation Dynamics Underlies Functional Switching of NF-κB for B Cell Activation.2016

    • Author(s)
      Inoue K, Shinohara H, Behar M, Yumoto N, Tanaka G, Hoffmann A, Aihara K, Okada-Hatakeyama M.
    • Journal Title

      npj Systems Biology and Applications

      Volume: 2 Issue: 1 Pages: 16024-16024

    • DOI

      10.1038/npjsba.2016.24

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] TAK1 maintains the survival of immunoglobulin λ-chain-positive B cells.2016

    • Author(s)
      Shinohara H, Nagashima T, Cascalho MI, Kurosaki T.
    • Journal Title

      Genes to Cells

      Volume: 21 Issue: 11 Pages: 1233-1243

    • DOI

      10.1111/gtc.12442

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Negative role of TAK1 for marginal zone B-cell development incidental to activation of the NF-κB non-canonical pathway2016

    • Author(s)
      Shinohara H, Kurosaki T.
    • Journal Title

      Immunology and Cell Biology

      Volume: 印刷中

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] A.LRRK1 controls B-cell responses by regulating CARMA1-dependent NF-κB activation2016

    • Author(s)
      3.Morimoto K, Baba Y, Shinohara H, Kang S, Nojima S, Kimura T, Ito D, Yoshida Y, Maeda Y, Sarashina-Kida H, Nishide M, Hosokawa T, Kato Y, Hayama Y, Yuhei K, Takamatsu H, Hirano T, Shima Y, Narazaki M, Kurosaki T, Toyofuku T, Kumanogoh A.
    • Journal Title

      Scientific Reports

      Volume: 印刷中

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] Integrated analysis of the dynamic gene expression regulated by NF-κB.2016

    • Author(s)
      Iwamoto K, Shinohara H, Hayashi T, Nikaido I, Suzuki Y and Okada M.
    • Organizer
      International Conference on Systems Biology (ICSB 2016).
    • Place of Presentation
      Barcelona, Spain.
    • Year and Date
      2016-09-16
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] 免疫・生体応答を制御するシステムの探究2016

    • Author(s)
      篠原久明
    • Organizer
      九州工業大学:BMIRCセミナー
    • Place of Presentation
      九州工業大学 (福岡県飯塚市)
    • Related Report
      2016 Research-status Report
    • Invited

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Published: 2015-04-16   Modified: 2022-02-16  

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