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Non-coding RNAs in keratinization

Research Project

Project/Area Number 15K09738
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Dermatology
Research InstitutionHokkaido University

Principal Investigator

Nomura Toshifumi  北海道大学, 大学病院, 講師 (50399911)

Co-Investigator(Kenkyū-buntansha) 清水 宏  北海道大学, 医学研究院, 教授 (00146672)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2017: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2016: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2015: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
KeywordsノンコーディングRNA / 角化 / 表皮 / 分化
Outline of Final Research Achievements

Long non-coding RNAs (lncRNAs) play key roles in a variety of processes necessary for homeostasis. However, their effects on keratinization have not been fully elucidated. In this study, we aimed to identify specific lncRNAs that regulate keratinization. First, we performed transcriptome sequencing of keratinocytes sampled from palmar and forearm skin and compared transcriptome profiles between them, since palmar skin is much more keratinized compared to forearm skin. These analyses finally led us to identify 13 candidate lncRNAs that may be involved in keratinization. Next, we knocked down the candidate lncRNAs in keratinocytes. Histological and transcriptional analysis using reconstructed 3D skin culture demonstrated that knockdown of several lncRNAs leads to disruption of keratinization. These data suggest that these lncRNAs could be required for keratinization.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (16 results)

All 2018 2017 2016 2015

All Journal Article (11 results) (of which Int'l Joint Research: 5 results,  Peer Reviewed: 11 results,  Open Access: 9 results,  Acknowledgement Compliant: 5 results) Presentation (5 results) (of which Int'l Joint Research: 2 results,  Invited: 2 results)

  • [Journal Article] Chromosomal inversions as a hidden disease-modifying factor for somatic recombination phenotypes.2018

    • Author(s)
      Nomura T, Suzuki S, Miyauchi T, Takeda M, Shinkuma S, Fujita Y, Nishie W, Akiyama M, Shimizu H
    • Journal Title

      JCI Insight

      Volume: 3 Issue: 6

    • DOI

      10.1172/jci.insight.97595

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Gentamicin-Induced Readthrough and Nonsense-Mediated mRNA Decay of SERPINB7 Nonsense Mutant Transcripts2018

    • Author(s)
      Ohguchi Yuka、Nomura Toshifumi、Suzuki Shotaro、Takeda Masae、Miyauchi Toshinari、Mizuno Osamu、Shinkuma Satoru、Fujita Yasuyuki、Nemoto Osamu、Ono Kota、McLean W.H. Irwin、Shimizu Hiroshi
    • Journal Title

      Journal of Investigative Dermatology

      Volume: 138 Issue: 4 Pages: 836-843

    • DOI

      10.1016/j.jid.2017.10.014

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Deficient stratum corneum intercellular lipid in a Japanese patient with lamellar ichthyosis by a homozygous deletion mutation in SDR9C7.2017

    • Author(s)
      Takeichi T, Nomura T, Takama H, Kono M, Sugiura K, Watanabe D, Shimizu H, Simpson MA, McGrath JA, Akiyama M.
    • Journal Title

      Br J Dermatol

      Volume: 印刷中 Issue: 3

    • DOI

      10.1111/bjd.15315

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Identification of SERPINB7 mutations in Korean patients with Nagashima-type palmoplantar keratosis2017

    • Author(s)
      On Hye Rang、Lee Sang Eun、Nomura Toshifumi、Miyauchi Toshinari、Suzuki Shotaro、Shimizu Hiroshi、Kim Soo-Chan
    • Journal Title

      Journal of Dermatology

      Volume: 44 Issue: 7 Pages: 840-841

    • DOI

      10.1111/1346-8138.13545

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Filaggrin Mutation in Korean Patients with Atopic Dermatitis2017

    • Author(s)
      On Hye Rang、Lee Sang Eun、Kim Song-Ee、Hong Won Jin、Kim Hyun Jung、Nomura Toshifumi、Suzuki Shotaro、Shimizu Hiroshi、Kim Soo-Chan
    • Journal Title

      Yonsei Medical Journal

      Volume: 58 Issue: 2 Pages: 395-395

    • DOI

      10.3349/ymj.2017.58.2.395

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Compound heterozygotes for filaggrin gene mutations do not always show severe atopic dermatitis.2017

    • Author(s)
      Sekiya, A., M. Kono, H. Tsujiuchi, T. Kobayashi, T. Nomura, M. Kitakawa, N. Suzuki, K. Yamanaka, H. Sueki, W. H. McLean, H. Shimizu and M. Akiyama
    • Journal Title

      J EUR ACAD DERMATOL

      Volume: 31 Issue: 1 Pages: 158-162

    • DOI

      10.1111/jdv.13871

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A severe case of X-linked ichthyosis showing palmar hyperlinearity without FLG mutations.2016

    • Author(s)
      Katayama S, Nomura T, Muramatsu K, Takeda M, Miyauchi T, Suzuki S, Shinkuma S, Fujita Y, Iwata H, Shimizu H
    • Journal Title

      Journal of European Academy for Dermatology and Venereology

      Volume: 31 Issue: 2

    • DOI

      10.1111/jdv.13863

    • Related Report
      2017 Annual Research Report 2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Revertant mosaicism in ichthyosis with confetti caused by a frameshift mutation in KRT1.2016

    • Author(s)
      Suzuki S, Nomura T, Miyauchi T, Takeda M, Nakamura H, Shinkuma S, Fujita Y, Akiyama M, Shimizu H
    • Journal Title

      Journal of Investigative Dermatology

      Volume: 136 Issue: 10 Pages: 2093-2095

    • DOI

      10.1016/j.jid.2016.05.109

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Extensive Erythema and Hyperkeratosis on the Extremities and Lumbar Area as an Unusual Mani-festation of Nagashima-type Palmoplantar Keratosis2016

    • Author(s)
      Miyauchi T, Nomura T, Suzuki S, Ohguchi Y, Yamaguchi Y, Shinkuma S, Natsuga K, Fujita Y, Shimizu H.
    • Journal Title

      Acta Dermato-Venereologica

      Volume: in press Pages: 856-858

    • DOI

      10.2340/00015555-2391

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Genetic analysis of a novel splice-site mutation in TMC8 reveals the in-vivo importance of the TMC domain of TMC8.2016

    • Author(s)
      Miyauchi T, Nomura T, Suzuki S, Takeda M, Shinkuma S, Arita K, Fujita Y, Shimizu H.
    • Journal Title

      British Journal of Dermatology

      Volume: in press Issue: 4 Pages: 803-806

    • DOI

      10.1111/bjd.14569

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Striate palmoplantar keratoderma: Report of a novel DSG1 mutation and atypical clinical manifestations2015

    • Author(s)
      Nomura T, Mizuno O, Miyauchi T, Suzuki S, Shinkuma S, Hata H, Fujita Y, Akiyama M, Shimizu H.
    • Journal Title

      Journal of Dermatological Science

      Volume: 80 Issue: 3 Pages: 223-225

    • DOI

      10.1016/j.jdermsci.2015.10.004

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] Chromosomal inversions as a hidden disease-modifying factor2017

    • Author(s)
      Nomura T, Suzuki S, Miyauchi T, Takeda M, Fujita Y, Nishie W, Akiyama M, Shimizu H
    • Organizer
      The 47th Annual Meeting of the European Society for Dermatological Research
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 皮膚のバリアとアレルギー2017

    • Author(s)
      乃村俊史
    • Organizer
      釧路医師会講演会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 診断に難渋した先天性魚鱗癬の1例2017

    • Author(s)
      乃村俊史,鈴木翔多朗,宮内俊成,竹田真依,藤田靖幸,西江 渉,秋山真志,清水 宏
    • Organizer
      第32回角化症研究会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 魚鱗癬と掌蹠角化症:症例から見えてきたこと2017

    • Author(s)
      乃村俊史、清水宏
    • Organizer
      群馬皮膚科セミナー
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Comprehensive analysis of long non-coding RNAs in keratinization.2015

    • Author(s)
      Toshifumi Nomura
    • Organizer
      The 40th Annual Meeting of the Japanese Society for Investigative Dermatology
    • Place of Presentation
      岡山コンベンションセンター(岡山県岡山市)
    • Year and Date
      2015-12-11
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research

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Published: 2015-04-16   Modified: 2019-03-29  

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