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The screening of somatic mutations using whole exome sequencing in brain malformations

Research Project

Project/Area Number 15K10367
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Neurosurgery
Research InstitutionHamamatsu University School of Medicine (2017)
Yokohama City University (2015-2016)

Principal Investigator

Nakashima Mitsuko  浜松医科大学, 医学部, 准教授 (20541965)

Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2017: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2016: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2015: ¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Keywords体細胞変異 / 全エクソーム解析 / TAS変異 / droplet digital PCR / GNAQ / MTOR / ラパマイシン / TAS解析
Outline of Final Research Achievements

We performed whole exome sequencing using paired samples from Sturge Weber syndrome and FCD Type IIb subjects and further investigated using deep sequencing. We identified lesion-specific somatic GNAQ mutation in individuals with Sturge Weber syndrome and MTOR mutations in individuals with FCD Type IIb. Functional analyses showed that phosphorylation of ribosomal protein S6 in FCD Type IIb brain tissues with MTOR mutations was clearly elevated compared with control samples. Transfection of any of the four MTOR mutants into HEK293T cells led to elevated phosphorylation of 4EBP, the direct target of mTOR kinase. These findings suggest that mutations in MTOR are likely to cause hyperactivation of the mTOR signaling pathway and induce dysregulation of growth of neurons and glia, or presumably of their progenitors during brain development. MTOR mutations are sensitive to rapamycin, therefore, mTOR inhibitors would be able to alleviate intractable epilepsy caused by MTOR mutations.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (8 results)

All 2017 2016 2015

All Journal Article (3 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 3 results,  Acknowledgement Compliant: 2 results,  Open Access: 2 results) Presentation (5 results) (of which Int'l Joint Research: 3 results)

  • [Journal Article] High prevalence of genetic alterations in early-onset epileptic encephalopathies associated with infantile movement disorders.2016

    • Author(s)
      Kobayashi Y, Tohyama J, Kato M, Akasaka N, Magara S, Kawashima H, Ohashi T, Shiraishi H, Nakashima M, Saitsu H, Matsumoto N.
    • Journal Title

      Brain Dev.

      Volume: 38 Issue: 7 Pages: 285-92

    • DOI

      10.1038/jhg.2016.27

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Somatic Mutations in the MTOR gene cause focal cortical dysplasia type IIb2015

    • Author(s)
      Nakashima M, Saitsu H, Takei N, Tohyama J, Kato M, Kitaura H, Shiina M, Shirozu H, Masuda H, Watanabe K, Ohba C, Tsurusaki Y, Miyake N, Zheng Y, Sato T, Takebayashi H, Ogata K, Kameyama S, Kakita A, Matsumoto N
    • Journal Title

      Ann. Neurol.

      Volume: 78 Issue: 3 Pages: 375-386

    • DOI

      10.1002/ana.24444

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] De novo DNM1 mutations in two cases of epileptic encephalopathy.2015

    • Author(s)
      Nakashima M, Kouga T, Lourenço CM, Shiina M, Goto T, Tsurusaki Y, Miyatake S, Miyake N, Saitsu H, Ogata K, Osaka H, Matsumoto N.
    • Journal Title

      Epilepsia

      Volume: Epub 2015 Nov 27. Issue: 1

    • DOI

      10.1111/epi.13257

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] 全エクソーム解析を用いた希少難治性てんかん1230例の包括的遺伝子解析2017

    • Author(s)
      中島光子
    • Organizer
      日本人類遺伝学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] WDR45 mutations in three male patients with West syndrome.2016

    • Author(s)
      Nakashima M, Takano K, Tsuyusaki Y, Yoshitomi S, Shimono M, Aoki Y, Kato M, Aida N, Mizuguchi T, Miyatake S, Miyake N, Osaka H, Saitsu H, Matsumoto
    • Organizer
      American Society of Human Genetics Annual Meeting 2016
    • Place of Presentation
      Vancouver, Canada
    • Year and Date
      2016-10-18
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] De novo DNM1 mutations in two cases of epileptic encephalopathy.2016

    • Author(s)
      Nakashima M, Kouga T, Lourenço CM, Shiina M, Goto T, Tsurusaki Y, Miyatake S, Miyake N, Saitsu H, Ogata K, Osaka H, Matsumoto N.
    • Organizer
      The 13th International Congress of Human Genetics
    • Place of Presentation
      国立京都国際会館(京都府京都市)
    • Year and Date
      2016-04-03
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] 限局性皮質異形成(FCD)IIb型におけるMTOR体細胞変異の同定.2015

    • Author(s)
      中島光子
    • Organizer
      日本人類遺伝学会第60回大会
    • Place of Presentation
      京王プラザホテル、新宿、東京
    • Year and Date
      2015-10-14
    • Related Report
      2015 Research-status Report
  • [Presentation] Somatic mutations in the MTOR gene cause focal cortical dysplasia Type IIb2015

    • Author(s)
      Mitsuko Nakashima
    • Organizer
      merican Society of Human Genetics Annual Meeting 2015
    • Place of Presentation
      Baltimore, MD, USA
    • Year and Date
      2015-10-06
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research

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Published: 2015-04-16   Modified: 2019-03-29  

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