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Application of modificomic technologies to discover and identify biomarkers for periodontal diseases

Research Project

Project/Area Number 15K11379
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Periodontology
Research InstitutionChiba University

Principal Investigator

Tsuchida Sachio  千葉大学, 医学部附属病院, 特任助教 (90410422)

Co-Investigator(Kenkyū-buntansha) 佐藤 守  千葉大学, 医学部附属病院, 特任准教授 (20401002)
Co-Investigator(Renkei-kenkyūsha) Aoki Akira  東京医科歯科大学, 医歯(薬)学総合研究科, 講師 (30302889)
Kobayashi Hiroaki  東京医科歯科大学, 医歯(薬)学総合研究科, 助教 (50396967)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2017: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2016: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2015: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywords歯学 / 歯周病学 / プロテオミクス / 質量分析計 / モディフィコミクス / 歯周疾患 / 質量分析技術 / MALDI-TOF MS
Outline of Final Research Achievements

Proteomics provides a better understanding of cells by elucidating the structure, function, and interactions of proteins. Furthermore, post-translational modification (PTM) of proteins is required to control complex and dynamic cellular processes via regulating interactions between key proteins. To understand these regulatory mechanisms, it is critical to profile the PTM-dependent protein- protein interactions. Our findings indicate that PTM of protein may be involved in the progression of periodontal disease and is a potential biomarker of periodontal disease. Further studies using a larger sample size are required to verify the findings of this study. In the future, phosphoproteomics and glycomics may be applied to the study of periodontal disease.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (19 results)

All 2018 2017 2016 2015

All Journal Article (9 results) (of which Int'l Joint Research: 7 results,  Peer Reviewed: 9 results,  Open Access: 7 results,  Acknowledgement Compliant: 2 results) Presentation (10 results) (of which Invited: 1 results)

  • [Journal Article] An improved in-house lysis-filtration protocol for bacterial identification from positive blood culture bottles with high identification rates by MALDI-TOF MS.2018

    • Author(s)
      Tsuchida S, Murata S, Miyabe A, Satoh M, Takiwaki M, Matsushita K, Nomura F
    • Journal Title

      Journal of microbiological methods

      Volume: 18 Pages: 1684-1688

    • DOI

      10.1016/j.mimet.2018.03.014

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Capsular serotyping of Haemophilus influenzae by using matrix-associated laser desorption ionization-time of flight mass?spectrometry.2018

    • Author(s)
      Takeuchi N, Segawa S, Ishiwada N, Ohkusu M, Tsuchida S, Satoh M, Matsushita K, Nomura F
    • Journal Title

      Journal of infection and chemotherapy : official journal of the Japan Society of Chemotherapy

      Volume: 18 Issue: 7 Pages: 300062-66

    • DOI

      10.1016/j.jiac.2018.02.007

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Assessment by Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry of the Effects of Preanalytical Variables on Serum Peptidome Profiles Following Long-Term Sample Storage.2018

    • Author(s)
      Tsuchida S, Satoh M, Umemura H, Sogawa K, Takiwaki M, Ishige T, Miyabayashi Y, Iwasawa Y, Kobayashi S, Beppu M, Nishimura M, Kodera Y, Matsushita K, Nomura F
    • Journal Title

      Proteomics. Clinical applications

      Volume: 15 Issue: 3 Pages: 47-53

    • DOI

      10.1002/prca.201700047

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Ubiquitination in Periodontal Disease: A Review2017

    • Author(s)
      Tsuchida S, Satoh M, Takiwaki M, Nomura F
    • Journal Title

      Int J Mol Sci

      Volume: 18 Issue: 7 Pages: 1476-1476

    • DOI

      10.3390/ijms18071476

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Combined Secretomics and Transcriptomics Revealed Cancer-Derived GDF15 is Involved in Diffuse-Type Gastric Cancer Progression and Fibroblast Activation.2016

    • Author(s)
      Ishige T, Nishimura M, Satoh M, Fujimoto M, Fukuyo M, Semba T, Kado S, Tsuchida S, Sawai S, Matsushita K, Togawa A, Matsubara H, Kaneda A, Nomura F
    • Journal Title

      Sci Rep.

      Volume: 6 Issue: 1 Pages: 21681-21681

    • DOI

      10.1038/srep21681

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Identification of a novel serum biomarker for pancreatic cancer, C4b-binding protein α-chain (C4BPA) by quantitative proteomic analysis using tandem mass tags2016

    • Author(s)
      Sogawa K, Takano S, Iida F, Satoh M, Tsuchida S, Kawashima Y, Yoshitomi H, Sanda A, Kodera Y, Takizawa H, Mikata R, Ohtsuka M, Shimizu H, Miyazaki M, Yokosuka O, Nomura F.
    • Journal Title

      Br J Cancer.

      Volume: 115 Issue: 8 Pages: 949

    • DOI

      10.1038/bjc.2016.295

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Anti-FIRs (PUF60) auto-antibodies are detected in the sera of early-stage colon cancer patients.2016

    • Author(s)
      Kobayashi S, Hoshino T, Hiwasa T, Satoh M, Rahmutulla B, Tsuchida S, Komukai Y, Tanaka T, Matsubara H, Shimada H, Nomura F, Matsushita K
    • Journal Title

      Oncotarget

      Volume: 7 Issue: 50 Pages: 82493-82503

    • DOI

      10.18632/oncotarget.12696

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Fibrinogen alpha C chain 5.9 kDa fragment (FIC5.9), a biomarker for various pathological conditions, is produced in post-blood collection by fibrinolysis and coagulation factors2016

    • Author(s)
      Kikuchi W, Nishimura M, Kuga T, Tsuchida S, Saito T, Satoh M, Noda K, Kodera Y, Tomonaga T, Nomura F
    • Journal Title

      Clinical Proteomics

      Volume: 13 Issue: 1 Pages: 27-27

    • DOI

      10.1186/s12014-016-9129-6

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Detection of Ubiquitinated Dermcidin in Gingival Crevicular Fluid in Periodontal Disease.2016

    • Author(s)
      Tsuchida S, Satoh M, Takiwaki M, Wakabayashi M, Ishige T, Beppu M, Nishimura M, Matsushita K, Nomura F.
    • Journal Title

      Intl J Pept Res Ther

      Volume: 未定 Issue: 2 Pages: 249-253

    • DOI

      10.1007/s10989-015-9504-6

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] 血液培養陽性検体よりの複数菌由来の核酸検出2018

    • Author(s)
      西村 基, 村田 正太, 姚 躍, 土田 祥央, 田中 知明, 松下 一之
    • Organizer
      第29回日本臨床微生物学会総会
    • Related Report
      2017 Annual Research Report
  • [Presentation] MALDI Biotyperを用いたrapid BACproIIの有用性に関する検討2017

    • Author(s)
      土田 祥央, 村田 正太, 齊藤 知子, 宮部 安規子, 瀬川 俊介, 佐海 知子, 上原 麻美, 中村 恵海, 渡邊 正治, 芦澤 一穂, 寺田 崇, 佐藤 守, 西村 基, 松下 一之, 野村 文夫
    • Organizer
      第28回日本臨床微生物学会総会
    • Place of Presentation
      長崎ブリックホール(長崎県・長崎市)
    • Year and Date
      2017-01-20
    • Related Report
      2016 Research-status Report
  • [Presentation] 質量分析計(MALDI-TOF-MS)を用いたHaemophilus influenzaeの莢膜型決定法の検討2017

    • Author(s)
      竹内 典子, 石和田 稔彦, 大楠 美佐子, 瀬川 俊介, 村田 正太, 土田 祥央, 佐藤 守, 野村 文夫
    • Organizer
      第28回日本臨床微生物学会総会
    • Place of Presentation
      長崎ブリックホール(長崎県・長崎市)
    • Year and Date
      2017-01-20
    • Related Report
      2016 Research-status Report
  • [Presentation] 37mmクオリティモニターを用いたMALDI-TOF MSによる血液培養ボトルからの迅速細菌同定の検討2017

    • Author(s)
      土田 祥央, 宮部 安規子, 村田 正太, 齊藤 知子, 瀬川 俊介, 佐海 知子, 上原 麻美, 中村 恵海, 渡邊 正治, 曽川 一幸, 滝脇 正貴, 西村 基, 佐藤 守, 松下 一之, 野村 文夫
    • Organizer
      第42回日本医用マススペクトル学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 保存された臨床検体(血清)の質量分析による劣化の評価 The effects of preanalytical variables on serum peptidome profiles following long-term storage2017

    • Author(s)
      土田 祥央,佐藤 守,梅村 啓史,曽川 一幸,滝脇 正貴,西村 基,小寺 義男,松下 一之,野村 文夫
    • Organizer
      日本プロテオーム学会 2017 年大会(JHUPO 第 15 回大会)
    • Related Report
      2017 Annual Research Report
  • [Presentation] 保存された臨床検体(血清)の質量分析による劣化の評価2017

    • Author(s)
      土田祥央
    • Organizer
      第3回クリニカルバイオバンク研究会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 血液培養陽性ボトルからの迅速同定におけるrapid BACproの有用性に関する検討2016

    • Author(s)
      村田 正太, 齊藤 知子, 宮部 安規子, 瀬川 俊介, 佐海 知子, 上原 麻美, 中村 恵海, 渡邊 正治, 芦澤 一穂, 寺田 崇, 土田 祥央, 佐藤 守, 西村 基, 野村 文夫, 松下 一之
    • Organizer
      第27回日本臨床微生物学会総会
    • Place of Presentation
      仙台国際センター(宮城県・仙台市)
    • Year and Date
      2016-01-29
    • Related Report
      2015 Research-status Report
  • [Presentation] 質量分析計による細菌迅速同定を目的とした直接同定用前処理方法の検討2016

    • Author(s)
      芦澤 一穂, 村田 正太, 齊藤 知子, 宮部 安規子, 瀬川 俊介, 佐海 知子, 上原 麻美, 中村 恵海, 渡邊 正治, 土田 祥央, 佐藤 守, 西村 基, 野村 文夫, 松下 一之, 寺田 崇
    • Organizer
      第27回日本臨床微生物学会総会
    • Place of Presentation
      仙台国際センター(宮城県・仙台市)
    • Year and Date
      2016-01-29
    • Related Report
      2015 Research-status Report
  • [Presentation] 千葉大学クリニカルバイオバンク・データベースの構築2015

    • Author(s)
      松下 一之, 西村 基, 澤部 祐司, 糸賀 栄, 清宮 正徳, 土田 祥央, 野村 文夫
    • Organizer
      日本臨床検査自動化学会第47回大会
    • Place of Presentation
      パシフィコ横浜(神奈川県・横浜市)
    • Year and Date
      2015-10-08
    • Related Report
      2015 Research-status Report
  • [Presentation] Effects of preanalytical variables on serum peptidome profiling for long-term storage using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry2015

    • Author(s)
      Sachio Tsuchida, Mamoru Satoh, Hiroshi Umemura, Kazuyuki Sogawa, Masaki Takiwaki, Minako Beppu, Motoi Nishimura, Yoshio Kodera, Kazuyuki Matsushita, Fumio Nomura
    • Organizer
      第40回年会日本医用マススペクトル学会
    • Place of Presentation
      アクトシティ浜松コングレスセンター(静岡県・浜松市)
    • Year and Date
      2015-09-17
    • Related Report
      2015 Research-status Report

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Published: 2015-04-16   Modified: 2019-03-29  

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