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Pattern discovery from antibiograms incorporated propagation with drug susceptibility

Research Project

Project/Area Number 15K12102
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Intelligent informatics
Research InstitutionKyushu Institute of Technology

Principal Investigator

Hirata Kouchi  九州工業大学, 大学院情報工学研究院, 教授 (20274558)

Research Collaborator YOKOYAMA Shigeki  ケーディーアイコンズ(株)
MATSUOKA Kimiko  株式会社西日本健康科学
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Fiscal Year 2017: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2016: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2015: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Keywordsパターン発見 / アンチバイオグラム / 伝搬パターン / 相互依存重集合 / 頻出相互依存重集合 / 一貫性に基づく特徴選択 / 反復特徴選択 / 感染伝搬パターン / 検査材料
Outline of Final Research Achievements

In this research, as discovery of propagation from antibiograms, we have designed the algorithm to extract propagation patterns. Then, we have observed that Streptococcus pneumoniae have the large ratio of the infectious propagation patterns, in which two patients are not identical, and they are in the same room and/or treated by the same physician.
Also, as pattern discovery based on drug susceptibility for antibiograms, we have designed the algorithm to extract mutually dependent multisets. Then, we have succeeded in extracting the mutually dependent multisets suggesting microbial substitution such as the occurrence of Pseudomonas aeruginosa after the occurrence of Staphylococcus aureus.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (11 results)

All 2018 2017 2015

All Journal Article (3 results) (of which Peer Reviewed: 3 results,  Acknowledgement Compliant: 1 results) Presentation (8 results) (of which Int'l Joint Research: 7 results)

  • [Journal Article] Proc. 10th Asian Conference on Intelligent Information and Database Systems (ACIIDS 2018)2018

    • Author(s)
      Taiga Kawaguchi, Takuya Yoshino, Kouichi Hirata
    • Journal Title

      Lecture Notes in Artificial Intelligence

      Volume: 10751 Pages: 276-286

    • DOI

      10.1007/978-3-319-75417-8_26

    • ISBN
      9783319754161, 9783319754178
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Extacting Mutually Dependent Multisets2017

    • Author(s)
      Natsuki Kiyota, Sho Shimamura, Kouichi Hirata
    • Journal Title

      Lecture Notes in Artificial Intelligence

      Volume: 10558 Pages: 267-280

    • DOI

      10.1007/978-3-319-67786-6_19

    • ISBN
      9783319677859, 9783319677866
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Extracting Propagation Patterns from Bacterial Culture Data in Medical Facility2017

    • Author(s)
      Kazuki Nagayama, Kouichi Hirata, Shigeki Yokoyama, Kimiko Matsuoka
    • Journal Title

      Lecture Notes in Artificial Intelligence

      Volume: 10091 Pages: 1-9

    • DOI

      10.1007/978-3-319-50953-2_28

    • ISBN
      9783319509525, 9783319509532
    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] Earth Mover's Distance for Rooted Labeled Unordered Trees based on Tai Mapping Hierarchy2018

    • Author(s)
      Taiga Kawaguchi, Kouichi Hirata
    • Organizer
      7th International Conference on Pattern Recognition Applications and Methods
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Nearest Neighbor Search using Sketches as Quantized Images of Dimension Reduction2018

    • Author(s)
      Naoya Higuchi, Yasunobu Imamura, Tetsuji Kuboyama, Kouichi Hirata, Takeshi Shinohara
    • Organizer
      7th International Conference on Pattern Recognition Applications and Methods
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] アンチバイオグラムからの相互依存重集合の抽出2017

    • Author(s)
      清田菜月, 平田耕一
    • Organizer
      第103回人工知能学会基本問題研究会
    • Place of Presentation
      大分県由布市
    • Year and Date
      2017-03-13
    • Related Report
      2016 Research-status Report
  • [Presentation] On the Applications of Iterative Consistency-Based Feature Selection to Nucleotide Sequences for Influenza A Viruses2017

    • Author(s)
      Sho Shomamura, Kouichi Hirata
    • Organizer
      2017 International Workshop on Smart Info-Media Systems in Asia (SISA 2017)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Iterative Feature Selection Based on Binary Consistency2017

    • Author(s)
      Sho Shimamura, Kouichi Hirata
    • Organizer
      8th International Conference on E-Service and Knowledge Management (ESKM 2017)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Anchored Alignment Distance between Rooted Labeled Unordered Trees2017

    • Author(s)
      Takuya Yoshino, Yuma Ishizaka, Kouichi Hirata
    • Organizer
      Federated Conference on Computer Science and Information Systems
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Pivot Selection for Dimension Reduction using Annealing by Increasing Resampling2017

    • Author(s)
      Yasunobu Imamura, Naoya Higuchi, Tetsuji Kuboyama, Kouichi Hirata, Takeshi Shinohara
    • Organizer
      Learn. Wissen. Daten. Analysen.
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] On Extracting Propagation Patterns from Bacterial Culture Data in Medical Facility2015

    • Author(s)
      Kazuki Nagayama, Kouichi Hirata, Shigeki Yokoyama, Kimiko Matsuoka
    • Organizer
      Workshop on Time Series Data Analysis and its Applications
    • Place of Presentation
      Keio University, Yokohama, Kanagawa
    • Year and Date
      2015-11-17
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research

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Published: 2015-04-16   Modified: 2019-03-29  

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