• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Diversity and harmonization of expressed functions in microbial ecosystems

Research Project

Project/Area Number 15K12228
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Environmental engineering and reduction of environmental burden
Research InstitutionShizuoka University

Principal Investigator

Futamata Hiroyuki  静岡大学, グリーン科学技術研究所, 教授 (50335105)

Project Period (FY) 2015-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2016: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Fiscal Year 2015: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywords微生物生態系 / 微生物間相互作用 / 微生物動態 / 増殖 / 微生物群集 / 合成微生物生態系 / 制御 / 数理モデル / 調和 / 遺伝子発現 / 分配 / 微生物複雑系 / 恒常性維持機構 / 自己組織化 / 変遷機構 / 微生物生態
Outline of Final Research Achievements

This study investigated the factors that determine the dynamics of bacterial communities in a complex system using multidisciplinary methods. Three phenol-degrading, phylogenetically different bacterial strains were used. Two metrics, J parameter based on kinetic parameters and ‘interspecies interaction’, were compared to predict which strain would become dominant in a SME. Population densities of strains used in SMEs were enumerated by real-time PCR techniques and were compared to predictions made from those two metrics. These results demonstrate that the effects of interspecies interactions within microbial communities contribute to determining the dynamics of the microbial ecosystem. The supernatant of strain C8 (C8SP) repressed significantly the growth of strains R2. Of the C8SP fractionated with different molecular weight and organic solvents, the fraction less than 500 Da in the H2O-soluble components repressed the growth of strain R2.

Report

(3 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • Research Products

    (13 results)

All 2017 2016 2015 Other

All Int'l Joint Research (2 results) Journal Article (4 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 4 results,  Open Access: 3 results,  Acknowledgement Compliant: 3 results) Presentation (6 results) (of which Int'l Joint Research: 1 results,  Invited: 2 results) Remarks (1 results)

  • [Int'l Joint Research] Laboratory of Food crops/Institute of Tropical Agriculture/Universiti Putra Malaysia(Malaysia)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Pacific Northwest National Laboratory(米国)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] 微生物生態系の理解に向けた挑戦 ~微生物を用いた環境浄化の取り組みを緒として~2017

    • Author(s)
      鈴木研志、Fatma Azwani Abdul Aziz
    • Journal Title

      土と微生物

      Volume: -

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Draft genome sequence of Pseudomonas sp. LAB-08 isolated from trichloroethene contaminated aquifer soil2016

    • Author(s)
      Kenshi Suzuki, Fatma A. A. Aziz, Yuma Inuzuka, Yosuke Tashiro, and Hiroyuki Futamata
    • Journal Title

      Genome Announcements

      Volume: Sep.22:4(5) Issue: 5

    • DOI

      10.1128/genomea.00948-16

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Editorial: Development of microbial ecological theory: stability, plasticity and evolution of microbial ecosystems.2016

    • Author(s)
      Shin Haruta, Yasuhisa Saito and Hiroyuki Futamata
    • Journal Title

      Frontiers in Microbiology

      Volume: 7 Pages: 2069-2069

    • DOI

      10.3389/fmicb.2016.02069

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Interspecies interactions are an integral determinant of microbial community dynamics2015

    • Author(s)
      2. Fatma Azwani Abdul Aziz*, Kenshi Suzuki, Akihiro Ohtaki, Keita Sagegami, Hidetaka Hirai, Jun Seno, Naoko Mizuno, Yuma Inuzuka, Yasuhisa Saito, Yosuke Tashiro, Akira Hiraishi and Hiroyuki Futamata
    • Journal Title

      Frontiers in Microbiology

      Volume: 6 Pages: 1148-1148

    • DOI

      10.3389/fmicb.2015.01148

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Presentation] 共存って何だろう?~物質を介したやりとりで生まれる生態系の恒常性~2017

    • Author(s)
      本荘雅宏、鈴木研志、田代陽介、二又裕之
    • Organizer
      静岡ライフサイエンスシンポジウム
    • Place of Presentation
      静岡大学(静岡県静岡市)
    • Related Report
      2016 Annual Research Report
  • [Presentation] Homeostatic Mechanism of Microbial Ecosystem2017

    • Author(s)
      Hiroyuki Futamata
    • Organizer
      PNNL Symposium
    • Place of Presentation
      Pacific Northwest National Laboratory (Richland, WA, USA)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Pseudomonas sp. C8株が生産する増殖抑制物質の特定とその生産機構2016

    • Author(s)
      鈴木研志、アズワニ ファティマ、犬塚友麻、本荘雅宏、田代陽介、二又裕之
    • Organizer
      日本生物工学会
    • Place of Presentation
      富山大学(富山県富山市)
    • Year and Date
      2016-09-28
    • Related Report
      2016 Annual Research Report
  • [Presentation] モデル微生物生態系における異種微生物の共存システム2016

    • Author(s)
      鈴木研志、ファティマ アズワニ、犬塚友麻、本荘雅宏、斉藤保久、田代陽介、二又裕之
    • Organizer
      環境バイオテクノロジー学会
    • Place of Presentation
      広島県民文化センター(広島県広島市)
    • Related Report
      2016 Annual Research Report
  • [Presentation] 微生物生態系の理解(解析と制御)に向けた挑戦 ~微生物を用いた環境浄化の取り組みを緒として~2016

    • Author(s)
      二又裕之
    • Organizer
      日本土壌微生物学会大会
    • Place of Presentation
      岐阜大学(岐阜県岐阜市)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 15.Flexible metabolic changes caused by cell-to-cell interaction have relevance to community succession, self-organizing mechanism, and stability of microbial ecosystem2015

    • Author(s)
      Kenshi Suzuki, Fatma Azwani, Yuma Inuzuka, Yosuke Tashiro, and Hiroyuki Futamata
    • Organizer
      ASM2015
    • Place of Presentation
      New Orleans, USA
    • Year and Date
      2015-05-31
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Remarks] 環境微生物生態工学研究室

    • URL

      http://cheme.eng.shizuoka.ac.jp/wordpress/futamatalab/

    • Related Report
      2016 Annual Research Report 2015 Research-status Report

URL: 

Published: 2015-04-16   Modified: 2022-02-16  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi