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Single molecule level analysis of dynamics of super-coild DNA

Research Project

Project/Area Number 15K12755
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Chemical biology
Research InstitutionOsaka University

Principal Investigator

Kawai Kiyohiko  大阪大学, 産業科学研究所, 准教授 (50314422)

Co-Investigator(Renkei-kenkyūsha) MARUYAMA Atsushi  東京工業大学, 生命理工学院, 教授 (40190566)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Fiscal Year 2016: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2015: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
KeywordsDNA / supercoil / fluorescence / blinking / 1分子測定 / 超らせん / 1分子計測 / 三本鎖 / 蛍光相関分光 / 速度 / DNA高次構造 / 蛍光 / 3重鎖
Outline of Final Research Achievements

In our body, DNA takes a negatively-supercoiled structure. It is suggested that negative-supercoil induces strand dissociation that leads to the formation of triple helix DNA. In this project, in order to investigate the dynamics of negatively-supercoiled DNA, we developed a method to detect the formation of the DNA triple helix structure at the single molecule level.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (30 results)

All 2018 2017 2016 2015 Other

All Journal Article (9 results) (of which Peer Reviewed: 7 results,  Open Access: 1 results,  Acknowledgement Compliant: 3 results) Presentation (15 results) (of which Int'l Joint Research: 5 results,  Invited: 5 results) Book (3 results) Remarks (3 results)

  • [Journal Article] Fluorescence Redox Blinking Adaptable to Structural Analysis of Nucleic Acids2018

    • Author(s)
      Miyata Takafumi、Shimada Naohiko、Maruyama Atsushi、Kawai Kiyohiko
    • Journal Title

      Chemistry A European Journal

      Volume: 印刷中 Issue: 26 Pages: 6755-6761

    • DOI

      10.1002/chem.201705668

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 増大特集 細胞多様性解明に資する光技術─見て,動かす Ⅱ.見えなかったものを視る 蛍光blinking制御による生体分子のダイナミクス観測─KACB法2017

    • Author(s)
      川井 清彦、丸山 厚
    • Journal Title

      生体の科学

      Volume: 68 Issue: 5 Pages: 430-431

    • DOI

      10.11477/mf.2425200679

    • ISSN
      0370-9531, 1883-5503
    • Year and Date
      2017-10-15
    • Related Report
      2017 Annual Research Report
  • [Journal Article] Single-Molecule Monitoring of the Structural Switching Dynamics of Nucleic Acids through Controlling Fluorescence Blinking2017

    • Author(s)
      Kawai Kiyohiko、Miyata Takafumi、Shimada Naohiko、Ito Syoji、Miyasaka Hiroshi、Maruyama Atsushi
    • Journal Title

      Angew. Chem. Int. Ed.

      Volume: 56 Issue: 48 Pages: 15329-15333

    • DOI

      10.1002/anie.201708705

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 蛍光blinking制御による核酸構造分析 ~核酸を1分子レベルで調べる~2017

    • Author(s)
      川井 清彦
    • Journal Title

      日本核酸化学会誌

      Volume: 1 Pages: 3-7

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 蛍光のblinkingを操り核酸構造を調べる2016

    • Author(s)
      川井 清彦
    • Journal Title

      光化学

      Volume: 47 Pages: 37-40

    • NAID

      40020839247

    • Related Report
      2016 Research-status Report
    • Acknowledgement Compliant
  • [Journal Article] BODIPY-labeled Fluorescent Aptamer Sensors for Turn-on Sensing of Interferon-gamma and Adenine Compounds on Cells2016

    • Author(s)
      A. Tsuchiya, S. Hashim, S. Ise, T. Furuhata, K. Kawai, R. Wakabayashi, M. Goto, N. Kamiya, S. Sando
    • Journal Title

      Analytical Sciences

      Volume: 32 Issue: 5 Pages: 543-547

    • DOI

      10.2116/analsci.32.543

    • NAID

      130005150951

    • ISSN
      0910-6340, 1348-2246
    • Related Report
      2016 Research-status Report
    • Peer Reviewed
  • [Journal Article] Photocurrent generation through charge-transfer processes in noncovalent perylenediimide/DNA complexes2015

    • Author(s)
      Takada, T.; Ido, M.; Ashida, A.; Nakamura, M.; Fujitsuka, M.; Kawai, K.; Majima, T.; Yamana, K.
    • Journal Title

      Chem. Eur. J.

      Volume: 18 Issue: 18 Pages: 6846-4851

    • DOI

      10.1002/chem.201406592

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Journal Article] DNA Microenvironment Monitored by Controlling Redox Blinking2015

    • Author(s)
      K. Kawai, K. Higashiguchi, A. Maruyama, and T. Majima
    • Journal Title

      ChemPhysChem

      Volume: 16 Issue: 17 Pages: 3590-3594

    • DOI

      10.1002/cphc.201500793

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Triple helix conformation-specific blinking of Cy3 in DNA2015

    • Author(s)
      K. Kawai, A. Maruyama
    • Journal Title

      Chem. Commun.

      Volume: 51 Issue: 23 Pages: 4861-4864

    • DOI

      10.1039/c5cc00607d

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] 蛍光のblinking観測による核酸構造の1分子分析2018

    • Author(s)
      川井 清彦
    • Organizer
      日本化学会 第98春季年会 (2018)
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 核酸を利用した蛍光blinkingの理解・制御と1分子分析への応用2017

    • Author(s)
      川井 清彦
    • Organizer
      関西大学先端科学技術推進機構研究部門別発表会 (第54回)
    • Place of Presentation
      吹田、大阪
    • Year and Date
      2017-03-02
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] 1分子の核酸からその構造を調べる2017

    • Author(s)
      川井 清彦
    • Organizer
      ケミカルバイオロジーMini-symposium at KIT
    • Place of Presentation
      京都、京都
    • Year and Date
      2017-01-16
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] DNA STRUCTURAL CHANGES MONITORED BY CONTROLLING THE FLUORESCENCE BLINKING2017

    • Author(s)
      川井 清彦、丸山 厚、真嶋 哲朗
    • Organizer
      The 15th Conference on Methods and Applications in Fluorescence
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 蛍光のblinkingを自在に操る分子技術の創出2016

    • Author(s)
      川井 清彦
    • Organizer
      第6回CSJ化学フェスタ2016
    • Place of Presentation
      船堀、千葉
    • Year and Date
      2016-11-16
    • Related Report
      2016 Research-status Report
  • [Presentation] Conformational Changes of DNA Monitored by Controlling the Fluorescence Blinking2016

    • Author(s)
      Kiyohiko Kawai, Atsushi Maruyama, Tetsuro Majima
    • Organizer
      ISANC2016 The 43rd International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      熊本、熊本
    • Year and Date
      2016-09-29
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] 蛍光blinkingを利用した核酸構造転移の1分子レベル観測2016

    • Author(s)
      川井 清彦, 丸山 厚, 真嶋 哲朗
    • Organizer
      第10回バイオ関連化学シンポジウム
    • Place of Presentation
      金沢、石川
    • Year and Date
      2016-09-09
    • Related Report
      2016 Research-status Report
  • [Presentation] 酸化・還元反応に基づく蛍光 blinking を利用したDNA 局所構造の観測2016

    • Author(s)
      川井 清彦, 東口 顕士, 丸山 厚, 真嶋 哲朗
    • Organizer
      2016光化学討論会
    • Place of Presentation
      東京、東京
    • Year and Date
      2016-09-07
    • Related Report
      2016 Research-status Report
  • [Presentation] 生体分子上で起こる反応の速度を1分子レベルで測る2016

    • Author(s)
      川井 清彦, 真嶋 哲朗, 丸山 厚
    • Organizer
      第19回生命化学研究会
    • Place of Presentation
      下関、山口
    • Year and Date
      2016-08-01
    • Related Report
      2016 Research-status Report
  • [Presentation] 蛍光ブリンキング制御による核酸構造・相互作用の速度論的リードアウト2016

    • Author(s)
      川井 清彦, 丸山 厚, 真嶋 哲朗
    • Organizer
      第 26 回バイオ・高分子シンポジウム
    • Place of Presentation
      東京、東京
    • Year and Date
      2016-07-28
    • Related Report
      2016 Research-status Report
  • [Presentation] DNA Conformational Changes Monitored by Controlling the Fluorescence Blinking2016

    • Author(s)
      Kiyohiko Kawai, Atsushi Maruyama, Tetsuro Majima
    • Organizer
      XXII International Round Table on Nucleosides, Nucleotides and Nucleic Acids
    • Place of Presentation
      Paris, France
    • Year and Date
      2016-07-20
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 核酸の反応・動きを 1 分子レベルで調べる2016

    • Author(s)
      川井 清彦
    • Organizer
      生体分子工学部門主催 PROS セミナー
    • Place of Presentation
      松山、愛媛
    • Year and Date
      2016-06-10
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] 蛍光のblinkingを自在に操る分子技術の創出2016

    • Author(s)
      川井 清彦
    • Organizer
      日本化学会第96春季年会
    • Place of Presentation
      京都(同志社大)
    • Year and Date
      2016-03-24
    • Related Report
      2015 Research-status Report
  • [Presentation] Conformational changes of DNA monitored by fluorescence blinking2015

    • Author(s)
      Kiyohiko Kawai, Atsushi Maruyama, Tetsuro Majima
    • Organizer
      Pacifichem 2015
    • Place of Presentation
      Hawaii (Hawaii Convention Center)
    • Year and Date
      2015-12-16
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] DNA microenvironment monitored by fluorescence blinking2015

    • Author(s)
      Kiyohiko Kawai, Kenji Higashiguchi, Atsushi Maruyama, and Tetsuro Majima
    • Organizer
      The 42nd International Symposium on Nucleic Acids Chemistry
    • Place of Presentation
      姫路(イーグレ姫路)
    • Year and Date
      2015-09-24
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Book] “遺伝子の蛍光ラベル化、蛍光標識” “光と生命の事典”2016

    • Author(s)
      川井 清彦
    • Total Pages
      2
    • Publisher
      朝倉書店
    • Related Report
      2015 Research-status Report
  • [Book] “Increasing the hole transfer rate through DNA by chemical modification” in “Topics in Current Chemistry: Chemical science of pi-electron systems”2015

    • Author(s)
      K. Kawai, T. Majima
    • Total Pages
      18
    • Publisher
      Springer-Verlag
    • Related Report
      2015 Research-status Report
  • [Book] “Increasing the hole transfer rate through DNA by chemical modification” in “Topics in Current Chemistry: Chemical science of pi-electron systems”2015

    • Author(s)
      K. Kawai, T. Majima
    • Total Pages
      10
    • Publisher
      Springer-Japan
    • Related Report
      2015 Research-status Report
  • [Remarks] 現象を調べ、わかったことを積極的に活用することを目指しています!

    • URL

      http://www.sanken.osaka-u.ac.jp/labs/mec/kawairesearch.html

    • Related Report
      2016 Research-status Report
  • [Remarks] Investigation of biological dynamic phenomena

    • URL

      http://www.sanken.osaka-u.ac.jp/labs/mec/kawairesearch-e.html

    • Related Report
      2016 Research-status Report
  • [Remarks]

    • URL

      http://www.sanken.osaka-u.ac.jp/labs/mec/kawairesearch.html

    • Related Report
      2015 Research-status Report

URL: 

Published: 2015-04-16   Modified: 2019-03-29  

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