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Evolutionary design of protein prenyltion pathways

Research Project

Project/Area Number 15K14228
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Biofunction/Bioprocess
Research InstitutionChiba University

Principal Investigator

Umeno Daisuke  千葉大学, 大学院工学研究院, 准教授 (00400812)

Co-Investigator(Kenkyū-buntansha) 河合 繁子  千葉大学, 大学院工学研究院, 助教 (40638920)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2016: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2015: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords合成生物学 / 制御 / 翻訳後修飾 / 進化分子工学 / プレニル化転移酵素 / イソプレノイド / カロテノイド / キナーゼ / スクリーニング / セレクション / プレニル化酵素 / 局在化 / 大腸菌 / バイオテクノロジー / 発現制御 / 生体機能利用 / 微生物
Outline of Final Research Achievements

The ultimate purpose of this study is to reconstitute the protein-localization system via reconstitution of yeast prenylation enzymes Ram-1/-2 system in Escherichia coli. We succeeded in establishing the colorimetric screening method to indirectly visualize the activity of protein prenylation systems. Also established was the selection platform for protein prenylation by way of the monitoring of expression level of reporter genes under the control of transcription factors with prenylation tags. We also succeeded in the improvement of the selection system by elevating the efficacy of incorporating reagent called dP, the hyper-mutagenic nucleoside analogues, into genomic DNA thereby reducing the necessary concentration of dP added to the selection media. This way, we could have established the robust and reproducible selection system for improving protein prenylation systems in heterologous hosts.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (19 results)

All 2018 2017 2016 2015

All Journal Article (5 results) (of which Peer Reviewed: 4 results,  Open Access: 4 results,  Acknowledgement Compliant: 3 results) Presentation (13 results) (of which Int'l Joint Research: 4 results,  Invited: 13 results) Book (1 results)

  • [Journal Article] Tweezing the cofactor preference of gymnosperm pinene synthase2018

    • Author(s)
      Tashiro, M., Ono, K., Kimura, O., Kawai-Noma, S., Saito, K., Umeno, D.:
    • Journal Title

      Biosci. Biochem. Bioeng.

      Volume: 82

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Directed evolution and expression tuning of geraniol synthase for efficient geraniol production in Escherichia coli.2017

    • Author(s)
      Tashiro, M., Fujii, A., Kawai-Noma, S., Saito, K., Umeno, D.
    • Journal Title

      J. Gen. Appl. Microbiol.

      Volume: 63

    • NAID

      130006206606

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] テルペノイド合成酵素の機能進化デザイン2016

    • Author(s)
      田代美希,梅野太輔
    • Journal Title

      化学と生物

      Volume: 54 Pages: 2016-2016

    • NAID

      130005815186

    • Related Report
      2016 Research-status Report
    • Open Access / Acknowledgement Compliant
  • [Journal Article] Bacterial production of pinene by laboratory-evolved pinene synthase.2016

    • Author(s)
      Tashiro, M., Kiyota H., Kawai-Noma S., Saito K., Ikeuchi M., Iijima Y., Umeno, D.
    • Journal Title

      ACS Synth. Biol.

      Volume: 5 Pages: 1011-1011

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] The rapid diversification of BetI-based transcriptional switches for the control of biosynthetic pathways and genetic circuits.2016

    • Author(s)
      Saeki K, Tominaga M, Kawai-Noma S, Saito S, Umeno D
    • Journal Title

      ACS Synthetic Biology

      Volume: 5 Issue: 11 Pages: 1201-1210

    • DOI

      10.1021/acssynbio.5b00230

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] 非天然トリテルペノイド生合成の進化合成生物学2018

    • Author(s)
      梅野太輔
    • Organizer
      日本農芸化学会2018大会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 分子スイッチ機能 進化から創発へ2017

    • Author(s)
      梅野太輔
    • Organizer
      生命の起源および進化学会 & 日本アストロバイオロジーネットワークジョイント夏の学校
    • Place of Presentation
      葉山
    • Year and Date
      2017-08-19
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] Directed Evolution of caerotenoid/terpenoid biosynthesis.2017

    • Author(s)
      Umeno, D.
    • Organizer
      Fusion Conference on Synthetic Biology for Natural Products
    • Place of Presentation
      Cancun, Mexco
    • Year and Date
      2017-03-05
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Directed evolution of carotenoid/ terpenoid biosynthetic pathways2017

    • Author(s)
      Daisuke Umeno
    • Organizer
      9th US-Japan Symposium on the Biosynthesis of Natural Products
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] カロテノイド生合成経路の「進化能」の探索2017

    • Author(s)
      梅野太輔
    • Organizer
      日本植物学会第81回大会シンポジウム
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] カロテノイド・テルペノイドの「リデザイン」技術2017

    • Author(s)
      梅野太輔
    • Organizer
      かずさDNA研究所公開セミナー
    • Place of Presentation
      木更津
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] Rapid Diversification and Compression of the Genetic Networks via Directed Evolution.2017

    • Author(s)
      Umeno, D.
    • Organizer
      Biosystems Design 3.0
    • Place of Presentation
      Singapore
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] トリテルペン生合成経路を実験室内で「進化」させる2017

    • Author(s)
      梅野太輔
    • Organizer
      JBA発酵と代謝研究会セミナー
    • Place of Presentation
      東京大学
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] Evolutionary design of biosynthetic pathways and regulatory networks2016

    • Author(s)
      Umeno, D.
    • Organizer
      OIST seminar series
    • Place of Presentation
      OIST, 沖縄
    • Year and Date
      2016-11-17
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] 生体分子の協働機能形式を進化デザインする2016

    • Author(s)
      梅野太輔
    • Organizer
      生物工学会夏のセミナー2016
    • Place of Presentation
      府中
    • Year and Date
      2016-07-16
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] Evolutionary design of biosynthetic pathways and regulatory networks2016

    • Author(s)
      Daisuke Umeno
    • Organizer
      Biosystems Design Synposuim 2.0
    • Place of Presentation
      Singapore, Singapore
    • Year and Date
      2016-03-21
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 生体高分子の協働様式の進化分子工学2016

    • Author(s)
      梅野太輔
    • Organizer
      酵素工学研究会第76講演会
    • Place of Presentation
      東京大学
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] 遺伝子発現制御系とその集積回路の進化工学2015

    • Author(s)
      梅野太輔
    • Organizer
      第17進化学会
    • Place of Presentation
      東京
    • Year and Date
      2015-08-20
    • Related Report
      2015 Research-status Report
    • Invited
  • [Book] 生物を作る~新薬を生み出すスーパー酵母を創る」,バイオベンチャーの冒険者たち2018

    • Author(s)
      梅野太輔
    • Total Pages
      200
    • Publisher
      幻冬舎
    • Related Report
      2017 Annual Research Report

URL: 

Published: 2015-04-16   Modified: 2022-12-28  

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