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Towards sub-single-cell analysis of diploid methylome

Research Project

Project/Area Number 15K14420
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Genome biology
Research InstitutionKyushu University

Principal Investigator

ITO TAKASHI  九州大学, 医学研究院, 教授 (90201326)

Co-Investigator(Renkei-kenkyūsha) MIURA Fumihito  九州大学, 大学院医学研究院, 講師 (50447348)
Project Period (FY) 2015-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2015: ¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
KeywordsDNAメチル化 / PBAT / 単一細胞 / バイサルファイトシーケンシング / バイサルファイトシーケンス / キャリアDNA
Outline of Final Research Achievements

DNA methylation represents a major mechanism for epigenetics, which determines the potential of individual cells. Genome-wide pattern of DNA methylation is termed as the methylome. The methylome differs from one another, depending not only on the type and status of the cell but also between the paternal and maternal genomes. Hence the ultimate methylome analysis is to decipher the complete methylation patterns of the two genomes in the same single cell. While we developed a unique method that has opened the door to the single-cell methylome analysis, here we further improved the method towards the ultimate methylome analysis.

Report

(3 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • Research Products

    (5 results)

All 2016 2015

All Journal Article (2 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 2 results,  Open Access: 2 results) Presentation (2 results) (of which Invited: 2 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] DNA methylation and gene expression in Mimulus guttatus2015

    • Author(s)
      Colicchio JM, Miura F, Kelly JK, Ito T, Hileman LC
    • Journal Title

      BMC Genomics

      Volume: 16 Issue: 1 Pages: 507-507

    • DOI

      10.1186/s12864-015-1668-0

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Changepoint detection in base-resolution methylome data reveals a robust signature of methylated domain landscape2015

    • Author(s)
      Yokoyama T, Miura F, Araki H, Okamura K, Ito T
    • Journal Title

      BMC Genomics

      Volume: 16 Issue: 1 Pages: 594-594

    • DOI

      10.1186/s12864-015-1809-5

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] 次世代シーケンシングによる高感度一塩基解像度メチローム解析2015

    • Author(s)
      伊藤隆司
    • Organizer
      第28回バイオメディカル分析科学シンポジウム (BMAS2015)
    • Place of Presentation
      長崎大学
    • Year and Date
      2015-08-22
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] PBATによる高感度メチロームシーケンシング2015

    • Author(s)
      伊藤隆司
    • Organizer
      第42回日本毒性学会
    • Place of Presentation
      金沢日航ホテル
    • Year and Date
      2015-07-01
    • Related Report
      2015 Research-status Report
    • Invited
  • [Patent(Industrial Property Rights)] 高効率な1本鎖DNA同士の連結方法2016

    • Inventor(s)
      三浦史仁、伊藤隆司
    • Industrial Property Rights Holder
      三浦史仁、伊藤隆司
    • Industrial Property Rights Type
      特許
    • Filing Date
      2016-05-16
    • Related Report
      2016 Annual Research Report

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Published: 2015-04-16   Modified: 2018-03-22  

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