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Elucidation of the inter-modular communication in the secondary siRNA biogenesis in plants

Research Project

Project/Area Number 15K14444
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Molecular biology
Research InstitutionThe University of Tokyo

Principal Investigator

Iwakawa Hiro-oki  東京大学, 分子細胞生物学研究所, 助教 (60710415)

Co-Investigator(Renkei-kenkyūsha) Tadakuma Hisashi  大阪大学, 蛋白質研究所, 助教 (10339707)
Research Collaborator Kyungmin Baeg  
Tsuboyama Kotaro  
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2016: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2015: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
KeywordsRNAサイレンシング / siRNA / microRNA / 植物 / 自己・非自己認識 / RNA依存性RNAポリメラーゼ
Outline of Final Research Achievements

RNA-DEPENDENT RNA POLYMERASE 6 (RDR6) is one of the key components for the secondary short interfering RNA (siRNA) biogenesis in plants. Here, we showed that RDR6 specifically converts aberrant non-polyadenylated (non-poly(A)) mRNAs into double-stranded RNAs, which are the precursors of siRNAs. We also demonstrated that the C-terminal RdRP domain of RDR6 possesses a preference for non-poly(A) sequences. Biochemical and biophysical experiments suggest that the poly(A) sequence inhibits the initiation step rather than the elongation step of complementary strand synthesis by RDR6. We have also successfully recapitulated the secondary siRNA biogenesis pathway in the tobacco cell extract. In this system, both the binding of AGO7-RISC to the target mRNA and in vitro translation of SILENCING DEFECTIVE 5 were required for the efficient complementary strand synthesis by RDR6.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (16 results)

All 2018 2017 2016 Other

All Journal Article (5 results) (of which Peer Reviewed: 5 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (7 results) (of which Int'l Joint Research: 2 results,  Invited: 2 results) Book (1 results) Remarks (3 results)

  • [Journal Article] In vitro RNA-dependent RNA Polymerase Assay Using Arabidopsis RDR62018

    • Author(s)
      Kyungmin Baeg, Yukihide Tomari, Hiro-oki Iwakawa
    • Journal Title

      Bio-protocol

      Volume: 8 Issue: 1

    • DOI

      10.21769/bioprotoc.2673

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] ilencing messages in a unique way2017

    • Author(s)
      Hiro-oki Iwakawa and Yukihide Tomari,
    • Journal Title

      Nature Plants,

      Volume: 3 Issue: 10 Pages: 769-770

    • DOI

      10.1038/s41477-017-0028-2

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Biochemical and single-molecule analyses of the RNA silencing suppressing activity of CrPV-1A.2017

    • Author(s)
      Watanabe M, Iwakawa HO, Tadakuma H, Tomari Y.
    • Journal Title

      Nucleic Acids Res.

      Volume: 45(18) Issue: 18 Pages: 10837-10844

    • DOI

      10.1093/nar/gkx748

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 植物のRNAサイレンシング機構が自己のmRNAを攻撃しないメカニズム2017

    • Author(s)
      岩川 弘宙
    • Journal Title

      BSJ-Review

      Volume: 8 Issue: B Pages: 58-70

    • DOI

      10.24480/bsj-review.8b4.00114

    • ISSN
      2432-9819
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The poly(A) tail blocks RDR6 from converting self mRNAs into substrates for gene silencing.2017

    • Author(s)
      Baeg K, *Iwakawa HO, *Tomari Y.
    • Journal Title

      Nature Plants

      Volume: 3 Issue: 4 Pages: 17036-17036

    • DOI

      10.1038/nplants.2017.36

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] The poly(A) tail blocks RDR6 from converting self mRNAs into the substrates for gene silencing2017

    • Author(s)
      Kyungmin Baeg, Hiro-oki Iwakawa, Yukihide Tomari
    • Organizer
      12th Microsymposium on small RNA biology
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 非自己核酸と防御2017

    • Author(s)
      岩川 弘宙
    • Organizer
      分生研シンポジウム「生命科学の若手フロンティア」
    • Related Report
      2017 Annual Research Report
  • [Presentation] RNA依存性RNAポリメラーゼ6の鋳型特異性2016

    • Author(s)
      Kyungmin Baeg, 岩川 弘宙, 泊 幸秀
    • Organizer
      平成28年度日本植物病理学会大会
    • Place of Presentation
      岡山コンベンションセンター (岡山県・岡山市)
    • Year and Date
      2016-03-21
    • Related Report
      2015 Research-status Report
  • [Presentation] The substrate specificity of RNA DEPENDENT RNA POLYMERASE 62016

    • Author(s)
      Kyungmin Baeg, Hiro-oki Iwakawa, Yukihide Tomari
    • Organizer
      Keystone Symposia Small RNA Silencing Meeting
    • Place of Presentation
      Keystone, Colorado, USA
    • Year and Date
      2016-01-24
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] The substrate specificity of RNA DEPENDENT RNA POLYMERASE 62016

    • Author(s)
      Kyungmin Baeg, Hiro-oki Iwakawa, Yukihide Tomari
    • Organizer
      第5回 植物RNA研究ネットワークシンポジウム
    • Place of Presentation
      東京大学駒場キャンパス 21 KOMCEE (東京都・目黒区)
    • Year and Date
      2016-01-08
    • Related Report
      2015 Research-status Report
  • [Presentation] 生化学で迫る植物の RNA サイレンシング2016

    • Author(s)
      岩川 弘宙
    • Organizer
      日本植物学会 第80回大会
    • Place of Presentation
      沖縄コンベンションセンター(沖縄県宜野湾市)
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] 植物のRNAサイレンシング機構2016

    • Author(s)
      岩川 弘宙
    • Organizer
      第39回日本分子生物学会
    • Place of Presentation
      パシフィコ横浜 (神奈川県横浜市)
    • Related Report
      2016 Research-status Report
    • Invited
  • [Book] Plant Argonaute Proteins: Methods and Protocols: In Vitro Analysis of ARGONAUTE-Mediated Target Cleavage and Translational Repression in Plants2017

    • Author(s)
      Tomari Y, Iwakawa HO* Editor Carbonell, Alberto
    • Total Pages
      297
    • Publisher
      Springer
    • ISBN
      9781493971640
    • Related Report
      2017 Annual Research Report
  • [Remarks] researchmap 岩川 弘宙

    • URL

      https://researchmap.jp/Hiro_Iwa/

    • Related Report
      2017 Annual Research Report
  • [Remarks] UTokyo research

    • URL

      http://www.u-tokyo.ac.jp/ja/utokyo-research/research-news/how-plants-can-tell-friend-from-foe.html

    • Related Report
      2016 Research-status Report
  • [Remarks] プレスリリース

    • URL

      http://www.iam.u-tokyo.ac.jp/pressrelease/170321/

    • Related Report
      2016 Research-status Report

URL: 

Published: 2015-04-16   Modified: 2019-03-29  

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