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Development of high-throughput system of visible immunoprecipitation assay

Research Project

Project/Area Number 15K14456
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Structural biochemistry
Research InstitutionKyoto University

Principal Investigator

Nakayama Kazuhisa  京都大学, 薬学研究科, 教授 (40192679)

Co-Investigator(Renkei-kenkyūsha) KATOH Yohei  京都大学, 大学院薬学研究科, 助教 (90568172)
Project Period (FY) 2015-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2016: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2015: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywordsタンパク質間相互作用 / GFP / Nanobody / 繊毛内タンパク質輸送複合体 / マイクロプレート / ポリスチレン親和性タグ
Outline of Final Research Achievements

The visible immunoprecipitation (VIP) assay is a convenient, flexible method to detect protein-protein interactions. In this study, I attempted to improve the VIP assay to detect protein-protein interactions on a microplate and enable high-throughput screening.
By fusing polystyrene (PS)-affinity peptide sequence to anti-GFP-Nanoboy, I successfully immobilized it to PS microplate. The sensitivity was further enhanced by ELISA, through optimizing the concentrations of the secondary and tertiary antibodies.

Report

(3 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • Research Products

    (46 results)

All 2017 2016 2015

All Journal Article (16 results) (of which Peer Reviewed: 16 results,  Open Access: 9 results,  Acknowledgement Compliant: 8 results) Presentation (30 results) (of which Int'l Joint Research: 6 results,  Invited: 2 results)

  • [Journal Article] Regulation of ciliary retrograde protein trafficking by the Joubert syndrome proteins ARL13B and INPP5E.2017

    • Author(s)
      Nozaki S, Katoh Y, Terada M, Michisaka S, Funabashi T, Takahashi S, Kontani K, Nakayama K.
    • Journal Title

      J. Cell. Sci.

      Volume: 130 Issue: 3 Pages: 563-576

    • DOI

      10.1242/jcs.197004

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Intraflagellar transport-A complex mediates ciliary entry and retrograde trafficking of ciliary G protein-coupled receptors2017

    • Author(s)
      Hirano T, Katoh Y, Nakayama K
    • Journal Title

      Mol. Biol. Cell

      Volume: 28 Issue: 3 Pages: 429-439

    • DOI

      10.1091/mbc.e16-11-0813

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Ciliary entry of KIF17 is dependent on its binding to the IFT-B complex via IFT46-IFT56 as well as on its nuclear localization signal2017

    • Author(s)
      Funabashi T, Katoh Y, Michisaka S, Terada M, Sugawa M, Nakayama K
    • Journal Title

      Mol. Biol. Cell

      Volume: 28 Issue: 5 Pages: 624-633

    • DOI

      10.1091/mbc.e16-09-0648

    • NAID

      120005997941

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Practical method for targeted disruption of cilia-related genes by using CRISPR/Cas9-mediated, homology-independent knock-in system2017

    • Author(s)
      Katoh Y, Michisaka S, Nozaki S, Funabashi T, Hirano T, Takei R, Nakayama K.
    • Journal Title

      Mol. Biol. Cell

      Volume: 28 Issue: 7 Pages: 898-906

    • DOI

      10.1091/mbc.e17-01-0051

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Overall architecture of the intraflagellar transport (IFT)-B complex containing Cluap1/IFT38 as an essential component of the IFT-B peripheral subcomplex.2016

    • Author(s)
      Katoh Y, Terada M, Nishijima Y, Takei R, Nozaki S, Hamada H, Nakayama K
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 291 Issue: 21 Pages: 10962-10975

    • DOI

      10.1074/jbc.m116.713883

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Alteration of transbilayer phospholipid compositions is involved in cell adhesion, cell spreading, and focal adhesion formation2016

    • Author(s)
      Miyano R, Matsumoto T, Takatsu H, Nakayama K, Shin HW
    • Journal Title

      FEBS Lett.

      Volume: 590 Issue: 14 Pages: 2138-2145

    • DOI

      10.1002/1873-3468.12247

    • NAID

      120007159976

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The phospholipid flippase ATP9A is required for the recycling pathway from the endosomes to the plasma membrane2016

    • Author(s)
      Tanaka Y, Ono N, Shima T, Tanaka G, Katoh Y, Nakayama K, Takatsu H, Shin HW
    • Journal Title

      Mol. Biol. Cell

      Volume: 27 Issue: 24 Pages: 3883-3893

    • DOI

      10.1091/mbc.e16-08-0586

    • NAID

      120005997942

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Modulation of primary cilia length by melanin-concentrating hormone receptor 1. Cell Signaling2016

    • Author(s)
      Hamamoto A, Yamato S, Katoh Y, Nakayama K, Yoshimura K, Takeda S, Kobayashi Y, *Saito Y
    • Journal Title

      Cellular Signalling

      Volume: 28 Issue: 6 Pages: 272-584

    • DOI

      10.1016/j.cellsig.2016.02.018

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Class I Arfs (Arf1 and Arf3) and Arf6 are localized to the Flemming body and play important roles in cytokinesis.2016

    • Author(s)
      Hanai, A., Ohgi, M., Yagi, C., Ueda, T., Shin, H.-W., and Nakayama, K.
    • Journal Title

      Journal of Biochemistry

      Volume: 159 Issue: 2 Pages: 201-208

    • DOI

      10.1093/jb/mvv088

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Journal Article] Modulation of ciliary length by melanin-concentrating hormone receptor 1.2016

    • Author(s)
      Hamamoto, A., Yamato, S., Katoh, Y., Nakayama, K., Yoshimura, K., Takeda, S.,
    • Journal Title

      Cell. Signal.

      Volume: 28 Pages: 572-584

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Journal Article] GM130 is a parallel tetramer with a flexible rod-like structure and N-terminally open (Y-shaped) and closed (I-shaped) conformations.2015

    • Author(s)
      Ishida R, Yamamoto A, Nakayama K, Sohda M, Misumi Y, Yasunaga T, Nakamura N.
    • Journal Title

      FEBS J.

      Volume: 印刷中 Issue: 11 Pages: 2232-2244

    • DOI

      10.1111/febs.13271

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Journal Article] Architectures of multisubunit complexes revealed by a visible immunoprecipitation assay using fluorescent fusion proteins.2015

    • Author(s)
      Katoh Y, Nozaki S, Hartanto D, Miyano R, Nakayama K
    • Journal Title

      Journal of Cell Science

      Volume: 128 Issue: 12 Pages: 2351-2362

    • DOI

      10.1242/jcs.168740

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Phospholipid flippase ATP10A translocates phosphatidylcholine and is involved in plasma membrane dynamics.2015

    • Author(s)
      Naito, T., Takatsu, H., Miyano, R., Takada, N., Nakayama, K., and Shin, H.-W.
    • Journal Title

      Journal of Biological Chemistry

      Volume: 290 Issue: 24 Pages: 15004-15017

    • DOI

      10.1074/jbc.m115.655191

    • NAID

      120005690225

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] SNAP23/25 and VAMP2 mediate exocytic event of transferrin receptor-containing recycling vesicles.2015

    • Author(s)
      Kubo K, Kobayashi M, Nozaki S, Yagi C, Hatsuzawa K, Katoh Y, Shin HW, Takahashi S, Nakayama K
    • Journal Title

      Biology Open

      Volume: 4 Issue: 7 Pages: 910-920

    • DOI

      10.1242/bio.012146

    • NAID

      120005997718

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] COPI-mediated retrieval of SCAP is critical for regulating lipogenesis under basal and sterol-deficient conditions.2015

    • Author(s)
      Takashima, K., Saitoh, A., Funabashi, T., Hirose, S., Yagi, C., Nozaki, S., Sato, R., Shin, H.-W., and Nakayama, K.
    • Journal Title

      Journal of Cell Science

      Volume: 128 Pages: 2805-2815

    • DOI

      10.1242/jcs.164137

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Journal Article] ATP11C mutation is responsible for the defect in phosphatidylserine uptake in UPS-1 cells.2015

    • Author(s)
      Takada, N., Takatsu, H., Miyano, R., Nakayama, K., and Shin, H.-W.
    • Journal Title

      Jounal of Lipid Research

      Volume: 56 Issue: 11 Pages: 2151-2157

    • DOI

      10.1194/jlr.m062547

    • NAID

      120005707794

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] Phospholipid flippase ATP10A, a me mber of type IV P-type ATPases, translocates phosphatidylcholine and is involved in plasma membrane dynamics.2016

    • Author(s)
      Naito, T., Takatsu, H., Miyano, R., Takada, N., Nakayama, K. & Shin, H.-W.
    • Organizer
      2016 ASCB Annu al Meeting.
    • Place of Presentation
      San Francisco, California, USA,
    • Year and Date
      2016-12-03
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Regulation of ciliary retrograde protein trafficking by Joubert syndrome proteins Arl13b and INPP5E.2016

    • Author(s)
      Nozaki, S., Katoh, Y. & Nakayama, K.
    • Organizer
      2016 ASCB Annu al Meeting.
    • Place of Presentation
      San Francisco, California, USA,
    • Year and Date
      2016-12-03
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Arl13b-dependant localization of INPP5E within cilia maintains ciliary r etrograde protein trafficking.2016

    • Author(s)
      Nozaki, S., Katoh, Y. & Nakayama, K.
    • Organizer
      The 28th CDB Meeting, “Cilia and Centrosomes: Current Advances and Future Directions”
    • Place of Presentation
      神戸
    • Year and Date
      2016-11-27
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Overall architecture of the intraflagellar transport (IFT)-B complex rev ealed by a visible immunoprecipitation assay.2016

    • Author(s)
      Katoh, Y., Terada, M. & Nakayama, K.
    • Organizer
      he 28th CDB Meeting, “Cilia and Centrosomes: Current Advances and Future Dir ections”
    • Place of Presentation
      神戸
    • Year and Date
      2016-11-27
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Differential roles of KIF17 and heterotrimeric kinesin-II interacting with the IFT-B complex in biogenesis of primary cilia.2016

    • Author(s)
      Funabashi, T., Katoh, Y. & Nakayama, K.
    • Organizer
      The 28th CDB Meeting, “Cilia and Centrosomes: Current Advances and Future Directions”.
    • Place of Presentation
      神戸
    • Year and Date
      2016-11-27
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] IFT-A複合体と相互作用するC11orf74の繊毛内タンパク質輸送における役割.2016

    • Author(s)
      高原万梨子、平野友章、加藤洋平、中山和久
    • Organizer
      第89回日 本生化学会大会
    • Place of Presentation
      仙台
    • Year and Date
      2016-09-25
    • Related Report
      2016 Annual Research Report
  • [Presentation] キネシン2とIFT複合体の相互作用の様式の解明と繊毛形成における役割.2016

    • Author(s)
      船橋輝記、加藤洋平、中山和久
    • Organizer
      第89回日 本生化学会大会
    • Place of Presentation
      仙台
    • Year and Date
      2016-09-25
    • Related Report
      2016 Annual Research Report
  • [Presentation] P4-ATPaseによるリン脂質フリップが膜変形に与える影響.2016

    • Author(s)
      高田直人、中山和久、申 惠媛
    • Organizer
      第89回日本生化学会大会
    • Place of Presentation
      仙台
    • Year and Date
      2016-09-25
    • Related Report
      2016 Annual Research Report
  • [Presentation] リン脂質フリッパーゼATP11CのPKCによる制御機構.2016

    • Author(s)
      高津宏之、高山真裕、中山和久、申 惠媛
    • Organizer
      第89回日本生化学会大会
    • Place of Presentation
      仙台
    • Year and Date
      2016-09-25
    • Related Report
      2016 Annual Research Report
  • [Presentation] ジュベール症候群原因遺伝子産物Arl13bによって制御される繊毛内タンパク質輸送の分子機構.2016

    • Author(s)
      加藤洋平、野崎梢平、中山和久
    • Organizer
      第 89回日本生化学会大会シンポジウム「Arfファミリー低分子量Gタンパク質群が介在する多彩な生理機能と関連疾患」
    • Place of Presentation
      仙台
    • Year and Date
      2016-09-25
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 繊毛内のイノシトールリン脂質代謝とタンパク質の局在におけるArl13bとIFT-Bの役割.2016

    • Author(s)
      野崎梢平、加藤洋平、中山和久
    • Organizer
      第15回 次 世代を担う若手ファーマ・バイオフォーラム2016
    • Place of Presentation
      大阪
    • Year and Date
      2016-09-10
    • Related Report
      2016 Annual Research Report
  • [Presentation] 繊毛内タンパク質の輸送を担うIFT-A複合体の構築様式と機能の解明.2016

    • Author(s)
      平野友章、加藤洋平、中山和久
    • Organizer
      第15回 次 世代を担う若手ファーマ・バイオフォーラム2016
    • Place of Presentation
      大阪
    • Year and Date
      2016-09-10
    • Related Report
      2016 Annual Research Report
  • [Presentation] 中心体/基底小体で複合体を形成するRabL2-Cep19-FOPの機能の解析.2016

    • Author(s)
      西島侑哉、萩谷遥平、加藤洋平、中山和久
    • Organizer
      第15回 次 世代を担う若手ファーマ・バイオフォーラム2016
    • Place of Presentation
      大阪
    • Year and Date
      2016-09-10
    • Related Report
      2016 Annual Research Report
  • [Presentation] 繊毛内のイノシトールリン脂質代謝とタンパク質の局在におけるArl13bとIFT-Bの役割.2016

    • Author(s)
      野崎梢平、加藤洋平、中山和久
    • Organizer
      第68回日本細胞生物学会大会
    • Place of Presentation
      京都
    • Year and Date
      2016-06-16
    • Related Report
      2016 Annual Research Report
  • [Presentation] 繊毛内タンパク質輸送複合体IFT-Aの構築様式と機能の解明.2016

    • Author(s)
      平野友章、加藤洋平、中山和久
    • Organizer
      第68回日本細胞生物学会大会
    • Place of Presentation
      京都
    • Year and Date
      2016-06-15
    • Related Report
      2016 Annual Research Report
  • [Presentation] KIF17とIFT複合体の相互作用様式の解明と繊毛形成における役割.2016

    • Author(s)
      船橋輝記、加藤洋平、中山和久
    • Organizer
      第68回日本細胞生物学会大会
    • Place of Presentation
      京都
    • Year and Date
      2016-06-15
    • Related Report
      2016 Annual Research Report
  • [Presentation] 観るだけでわかるタンパク質間相互作用解析法」を活用した繊毛内タンパク質輸送複合体 IFT-Bの構築様式の解明.2016

    • Author(s)
      加藤洋平、寺田将也、野崎梢平
    • Organizer
      第68回日本細胞生物学会大会
    • Place of Presentation
      京都
    • Year and Date
      2016-06-15
    • Related Report
      2016 Annual Research Report
  • [Presentation] Trafficking Machineries within Cilia: Arc hitectures and Functions of the IFT-A and IFT-B complexes.2016

    • Author(s)
      Nakayama, K., Katoh, Y., Terada, T., Nozaki, S., Hirano, T. & Funabashi, T.
    • Organizer
      第68回日本細胞生物学会大会シンポジウム「高次生命機能を司るメンブレ ントラフィック:分子基盤からその破綻による疾患発症の理解に向けて」
    • Place of Presentation
      京都
    • Year and Date
      2016-06-15
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 「観るだけでわかるタンパク質間相互作用解析法」の開発と繊毛内タンパク質輸送複合体 IFT-B の 構築様式の解明.2016

    • Author(s)
      加藤洋平、寺田将也、中山和久
    • Organizer
      第63回日本生化学会近畿支部例会
    • Place of Presentation
      神戸
    • Year and Date
      2016-05-21
    • Related Report
      2016 Annual Research Report
  • [Presentation] KIF17 と IFT 複合体の相互作用様式の解明と繊毛内輸送における役割.2016

    • Author(s)
      船橋輝記、加藤洋平、中山和久
    • Organizer
      第63回日本生化学会近畿支部例会
    • Place of Presentation
      神戸
    • Year and Date
      2016-05-21
    • Related Report
      2016 Annual Research Report
  • [Presentation] ホスファチジルセリン取り込み異常のCHO-K1変異株(UPS-1)におけるflippaseの発現解析.2015

    • Author(s)
      高田直人、高津宏之、宮野吏永、中山和久、申惠媛
    • Organizer
      第38回日本分子生物学会年会・第88回日本生化学会大会合同大会
    • Place of Presentation
      神戸
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
  • [Presentation] 繊毛内タンパク質輸送複合体IFT-Bの構築様式とCLUAP1の機能の解明.2015

    • Author(s)
      寺田将也、加藤洋平、野崎梢平、武井領汰、中山和久
    • Organizer
      第38回日本分子生物学会年会・第88回日本生化学会大会合同大会
    • Place of Presentation
      神戸
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
  • [Presentation] 中心体/基底小体で複合体を形成するRabL2とCep19の機能の解析.2015

    • Author(s)
      西島侑哉、萩谷遥平、加藤洋平、中山和久
    • Organizer
      第38回日本分子生物学会年会・第88回日本生化学会大会合同大会
    • Place of Presentation
      神戸
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
  • [Presentation] COPI被覆小胞を介するSCAP-SREBP複合体のゴルジ体から小胞体への逆行輸送による2015

    • Author(s)
      船橋輝記、高島皓平、齋藤明奈、廣瀬祥平、申惠媛、中山和久
    • Organizer
      第38回日本分子生物学会年会・第88回日本生化学会大会合同大会
    • Place of Presentation
      神戸
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
  • [Presentation] Visible immunoprecipitation(VIP)アッセイによるExocyst複合体の構築様式の解明.2015

    • Author(s)
      野崎梢平、加藤洋平、中山和久
    • Organizer
      第14回 次世代を担う若手ファーマ・バイオフォーラム2015
    • Place of Presentation
      千葉
    • Year and Date
      2015-09-12
    • Related Report
      2015 Research-status Report
  • [Presentation] COPI被覆小胞を介するSCAP-SREBP複合体のゴルジ体-小胞体間の逆行輸送による脂質代謝調節.2015

    • Author(s)
      船橋輝記、高島皓平、齋藤明奈、廣瀬祥平、申 惠媛、中山和久
    • Organizer
      第14回 次世代を担う若手ファーマ・バイオフォーラム2015
    • Place of Presentation
      千葉
    • Year and Date
      2015-09-12
    • Related Report
      2015 Research-status Report
  • [Presentation] リン脂質フリッパーゼATP10AのPCフリップ活性および細胞膜ダイナ ミクスへの関与2015

    • Author(s)
      内藤朋樹、高津宏之、宮野吏永、高田直人、中山和久、申 惠媛
    • Organizer
      第14回 次世代を担う若手ファーマ・バイオフォーラム2015
    • Place of Presentation
      千葉
    • Year and Date
      2015-09-12
    • Related Report
      2015 Research-status Report
  • [Presentation] Architectures of the BBSome, IFT-B, and Exocyst Complexes Revealed by Visible Immunoprecipitation (VIP) Assay Using Fluorescent Fusion Proteins.2015

    • Author(s)
      Nakayama, K., Katoh, Y., Nozaki, S., & Terada, M.
    • Organizer
      FASEB Science Research Conference, “Biology o f Cilia and Flagella”
    • Place of Presentation
      Snowmass Village, Colorado,
    • Year and Date
      2015-07-19
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Visible immunoprecipitation (VIP) アッセイによるマルチサブユニット複合体の構築様式の解明2015

    • Author(s)
      加藤洋平、野崎梢平、寺田将也、中山和久
    • Organizer
      第67回日本細胞生物学会大会
    • Place of Presentation
      東京
    • Year and Date
      2015-06-30
    • Related Report
      2015 Research-status Report
  • [Presentation] リン脂質フリッパーゼATP10AのPCフリップ活性及び細胞膜ダイナミクスへの関与.2015

    • Author(s)
      内藤朋樹、高津宏之、宮野吏永、高田直人、中山和久、申惠媛
    • Organizer
      第62回日本生化学会近畿支部例会
    • Place of Presentation
      草津
    • Year and Date
      2015-05-16
    • Related Report
      2015 Research-status Report

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Published: 2015-04-16   Modified: 2018-03-22  

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