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Investigation into Fo/F1 coupling of the FoF1 ATP synthase by time resolved single particle cryo-EM

Research Project

Project/Area Number 15K14464
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Structural biochemistry
Research InstitutionUniversity of Hyogo

Principal Investigator

Gerle Christoph  兵庫県立大学, 生命理学研究科, 特任准教授 (10561970)

Project Period (FY) 2015-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2016: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2015: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywordsmembrane protein / molecular machine / rotational catalysis / mitochondria / single particle cryo-EM / structural dynamics / sample preparation / protein purification / cryo-EM / single particle / image processing
Outline of Final Research Achievements

Mitochondrial FoF1-ATP synthase is central to energy conversion in all mammalian cells and employs a highly efficient mechanism of rotary catalysis to recycle cellular ATP from ADP and Pi. The structural basis for the efficient coupling between membrane bound Fo domain and matrix F1 domain remains unresolved due to the absence of X-ray crystal structures of the intact enzyme and the difficulty of visualizing large scale movements by X-ray crystallography in general. Here we took up the challenge of using the emerging technique of single particle cryo-EM to tacke this important biological problem. Purification of the bovine enzyme from cow heart muscle tissue was successfully established yielding more than 100 mg of excellent sample on a reproducible basis. A novel sample preparation approach named GraDeR was developed and successfully applied to monomeric bovine FoF1 ATP synthase and first structures obtained at a resolution of ~11 Angstrom.

Report

(3 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • Research Products

    (18 results)

All 2016 2015 Other

All Journal Article (5 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 5 results,  Open Access: 4 results,  Acknowledgement Compliant: 3 results) Presentation (12 results) (of which Int'l Joint Research: 7 results,  Invited: 9 results) Remarks (1 results)

  • [Journal Article] Recent advances of single particle analysis by cryo-electron microscopy and its application to membrane proteins2016

    • Author(s)
      光岡薫, Gerle, Christoph
    • Journal Title

      生化学

      Volume: 88 Issue: 4 Pages: 532-536

    • DOI

      10.14952/SEIKAGAKU.2016.880532

    • NAID

      40020948610

    • ISSN
      0037-1017
    • Year and Date
      2016-08-25
    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Osuda Y, Shinzawa-Itoh K, Tani K, Maeda S, Yoshikawa S, Tsukihara T, Gerle C.2016

    • Author(s)
      Osuda Y, Shinzawa-Itoh K, Tani K, Maeda S, Yoshikawa S, Tsukihara T, Gerle C.
    • Journal Title

      Microscopy

      Volume: 65 Issue: 3 Pages: 263-267

    • DOI

      10.1093/jmicro/dfv381

    • Related Report
      2016 Annual Research Report 2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] On the structural possibility of pore-forming mitochondrial FoF1 ATP synthase2016

    • Author(s)
      Gerle, Christoph
    • Journal Title

      BBA - Bioenergetics

      Volume: in press Issue: 8 Pages: 1191-1196

    • DOI

      10.1016/j.bbabio.2016.03.008

    • Related Report
      2016 Annual Research Report 2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] GraDeR: membrane protein complex preparation for single particle cryo-EM.2015

    • Author(s)
      Hauer F., Gerle C., Fischer N., Oshima A., Shinzawa-Itoh K., Shimada S., Yokoyama K., Fujiyoshi Y. & Stark H.
    • Journal Title

      Structure

      Volume: 23 Issue: 9 Pages: 1769-1775

    • DOI

      10.1016/j.str.2015.06.029

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Bovine F1FoATP synthase monomers bend the lipid bilayer in 2D membrane crystals.2015

    • Author(s)
      C. Jiko, K.M. Davies, K.S. Itoh, K. Tani, S. Maeda, D.J. Mills, T. Tsukihara, Y. Fujiyoshi W. Kuehlbrandt and C. Gerle
    • Journal Title

      eLIFE

      Volume: 06119 Pages: 1-36

    • DOI

      10.7554/elife.06119

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] GraDeR:単粒子解析等の膜タンハク質資料調整2016

    • Author(s)
      Christoph Gerle, Florian Hauer, Niels Fischer, Kyoko Shinzawa-Itoh, Satoru Shimada, Ken Yokoyama, Atsunori Oshima, Yoshinori Fujiyoshi, Holger Stark
    • Organizer
      日本生物物理学会
    • Place of Presentation
      つくば国際会議場(茨城県、つくば市)
    • Year and Date
      2016-11-25
    • Related Report
      2016 Annual Research Report
  • [Presentation] On the structural possibility of pore forming mitochondrial FoF1 ATP synthase.2016

    • Author(s)
      Gerle, C.
    • Organizer
      EBEC
    • Place of Presentation
      Riva del Garda, Italy
    • Year and Date
      2016-07-02
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Electron crystallography of tomographic volumes.2016

    • Author(s)
      Kazutoshi Tani, Karen Davies, Chimari Jiko, Shintaro Maeda, Kyoko Shinzawa-Itoh, Deryck Mills, Tomitake Tsukihara, Yoshinori Fujiyoshi, Werner Kuhlbrandt, Christoph Gerle
    • Organizer
      3DEM Gordon Research Conference
    • Place of Presentation
      Hong Kong University, Hong Kong
    • Year and Date
      2016-06-19
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Looking at a cellular machine in & out of the membrane: cryo-EM of the mammalian FoF1 ATP synthase.2016

    • Author(s)
      Christoph Gerle
    • Organizer
      IPR Seminar 'Introduction and overview of cryo-electron microscopy'
    • Place of Presentation
      大阪大学 (大阪府吹田市)
    • Year and Date
      2016-02-19
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] In & out of the membrane: cryoEM of bovine FoF1 ATP synthase.2016

    • Author(s)
      Gerle, C.
    • Organizer
      Minisymposium on Structure-Based Bioenergetics
    • Place of Presentation
      Spring-8 (兵庫県、佐用郡)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Membrane bending and more: cryoEM of the mammalian F-ATP synthase2016

    • Author(s)
      Gerle, C.
    • Organizer
      Mitochondrial bASiCs: ATP, Signaling and Calcium symposium
    • Place of Presentation
      University of Padua, Italy
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] CryoEM of the mammalian F-ATP synthase: possible implications for the mitochondrial permeability transition pore.2016

    • Author(s)
      Gerle, C.
    • Organizer
      departmental seminar
    • Place of Presentation
      University of Padua, Italy
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Novel sample preparation for cryo-EM: in silico & in aqua.2015

    • Author(s)
      Christoph Gerle
    • Organizer
      Young Scientists Satellite Meeting - Toward Next Generation of Microscopic Sciences - in The 2nd East-Asia Microscopy Conference
    • Place of Presentation
      淡路夢舞台(兵庫県淡路市)
    • Year and Date
      2015-11-27
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] In & Out of the Membrane: EM structure of the mammalian FoF1 ATP synthase2015

    • Author(s)
      Christoph Gerle
    • Organizer
      Cold Spring Harbor Asia conference on Mitochondria
    • Place of Presentation
      Suzhou, China
    • Year and Date
      2015-10-12
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Looking at "bad" 2D crystals can be good.2015

    • Author(s)
      Christoph Gerle
    • Organizer
      Seminar Talk, LMB, Cambridge, U.K.
    • Place of Presentation
      Cambridge, U.K.
    • Year and Date
      2015-07-03
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] GraDeR: membrane protein complex preparation for single particle cryo-EM.2015

    • Author(s)
      Gerle C., Hauer F., Fischer N., Oshima A., Shinzawa-Itoh K., Shimada S., Yokoyama K., Fujiyoshi Y. & Stark H.
    • Organizer
      3DEM Gordon Research Conference
    • Place of Presentation
      Colby-Sawyer College, New London. NH, U.S.A.
    • Year and Date
      2015-06-21
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] GraDeR: membrane protein complex preparation for single particle cryo-EM.2015

    • Author(s)
      Christoph Gerle
    • Organizer
      71st annual meeting of the Japanese Society of Microscopy
    • Place of Presentation
      京都国際会館(京都府京都市)
    • Year and Date
      2015-05-13
    • Related Report
      2015 Research-status Report
    • Invited
  • [Remarks] GraDeR for micelle-free membrane proteins

    • URL

      https://grader-protocol.com/

    • Related Report
      2016 Annual Research Report

URL: 

Published: 2015-04-16   Modified: 2023-03-16  

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