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Precise analysis of protein solution structure by Cryo-BioSAXS

Research Project

Project/Area Number 15K14467
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Structural biochemistry
Research InstitutionHigh Energy Accelerator Research Organization

Principal Investigator

Shimizu Nobutaka  大学共同利用機関法人高エネルギー加速器研究機構, 物質構造科学研究所, 准教授 (20450934)

Co-Investigator(Kenkyū-buntansha) 平木 雅彦  大学共同利用機関法人高エネルギー加速器研究機構, 機械工学センター, 准教授 (20282676)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2016: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2015: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
KeywordsSAXS / クライオ / 蛋白質 / 溶液構造
Outline of Final Research Achievements

Biological small-angle X-ray solution scattering (BioSAXS) is a method that can analyze the shape of a molecule in solution. However, since the measurement is usually performed at room temperature, it is often difficult to obtain a correct structure due to the effect of radiation damage in measurement at the synchrotron radiation facility. In this study, the method of measurement and analysis were developed to realize BioSAXS at low temperature below 0 ° C. Glycerol was used as a cryoprotectant, and the concentration of glycerol required to prevent freezing of water contained in the sample solution was investigated up to -100 ° C. Finally, it became possible to obtain a SAXS curve accurately at a low temperature up to -50 ° C.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (11 results)

All 2018 2017 2016 2015 Other

All Journal Article (3 results) (of which Peer Reviewed: 3 results,  Open Access: 3 results) Presentation (7 results) (of which Int'l Joint Research: 1 results) Remarks (1 results)

  • [Journal Article] Software Development for Analysis of Small-angle X-ray Scattering Data2016

    • Author(s)
      N. Shimizu, K. Yatabe, Y. Nagatani, S. Saijyo, T. Kosuge, N. Igarashi
    • Journal Title

      AIP Conference Proceedings

      Volume: in press

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Upgrade of Small Angle X-ray Scattering Beamline, BL-6A at the Photon Factory2016

    • Author(s)
      H. Takagi, N. Igarashi, T. Mori, S. Saijo, H. Ohta, Y. Nagatani, T. Kosuge, N.Shimizu
    • Journal Title

      AIP Conference Proceedings

      Volume: in press

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Development of Sample Exchange Robot PAM-HC for Beamline BL-1A at the Photon Factory2016

    • Author(s)
      M. Hiraki, N. Matsugaki, Y. Yamada and T. Senda
    • Journal Title

      AIP Conference Proceedings

      Volume: in press

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] 相関構造解析におけるX線小角散乱2018

    • Author(s)
      清水伸隆
    • Organizer
      第31回日本放射光学会年会・放射光科学合同シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] 放射光小角X線散乱装置の概要および最新情報2017

    • Author(s)
      清水伸隆
    • Organizer
      日本化学会第97春季年会
    • Place of Presentation
      慶應義塾大学日吉キャンパス(神奈川県・横浜市)
    • Year and Date
      2017-03-16
    • Related Report
      2016 Research-status Report
  • [Presentation] Photon Factoryの小角散乱ビームラインの現状2017

    • Author(s)
      清水伸隆、高木秀彰、西條慎也、永谷康子、森丈晴、 大田浩正、谷田部景子、高橋正剛、米澤健人、小菅隆、五十嵐教之
    • Organizer
      第30回日本放射光学会年会・放射光科学合同シンポジウム
    • Place of Presentation
      神戸芸術センター(兵庫県・神戸市)
    • Year and Date
      2017-01-07
    • Related Report
      2016 Research-status Report
  • [Presentation] Solution structure analysis of the protein complex using SEC-SAXS2017

    • Author(s)
      Nobutaka Shimizu
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Photon FactoryにおけるBioSAXS測定解析2017

    • Author(s)
      清水伸隆、米澤健人、谷田部景子、高橋正剛、永谷康子、五十嵐教之
    • Organizer
      日本結晶学会平成29年度年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] PFにおけるBioSAXS測定システムの高度化2015

    • Author(s)
      清水伸隆,西條慎也,永谷康子,谷田部景子,大田浩正,森丈晴,高木秀彰,小菅隆,五十嵐教之
    • Organizer
      日本結晶学会
    • Place of Presentation
      大阪府立大学中百舌鳥キャンパス(大阪府堺市)
    • Year and Date
      2015-10-17
    • Related Report
      2015 Research-status Report
  • [Presentation] Software development for analysis of small-angle X-ray scattering data2015

    • Author(s)
      Shimizu, N., Yatabe, K., Nagatani, Y., Saijyo, S., Kosuge, T. and Igarashi, N.
    • Organizer
      12th International Conference on Synchrotron Radiation Instrumentation
    • Place of Presentation
      New York (USA)
    • Year and Date
      2015-07-06
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Remarks] PF小角散乱ビームラインHP

    • URL

      http://pfwww.kek.jp/saxs/

    • Related Report
      2017 Annual Research Report

URL: 

Published: 2015-04-16   Modified: 2019-03-29  

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