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Comprehensive analysis and prediction of diffusional mobility of membrane proteins in living cells

Research Project

Project/Area Number 15K14509
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Cell biology
Research InstitutionOsaka University

Principal Investigator

UEDA Masahiro  大阪大学, 生命機能研究科, 教授 (40444517)

Project Period (FY) 2015-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2016: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2015: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Keywords1分子イメージング / 膜たんぱく質 / 拡散 / 1分子トラッキング / 脂質ラフト / 細胞性粘菌 / 膜タンパク質
Outline of Final Research Achievements

In this study, we developed a method to analyze comprehensively diffusional mobility of many membrane proteins in living cells by using single-molecule imaging analysis. In order to realize the method, we carried out (1) development of an automated single-molecule imaging microscope, (2) preparation of cells expressing fluorescently-labelled target proteins stably, (3) development of software for statistical analysis of diffusion based on the data obtained by single-molecule tracking. Through such comprehensive analysis, we found a relatively simple relationship between the structure of the membrane protein (the protein radius estimated from the number of transmembrane alpha helices) and the diffusion coefficient, suggesting that the Saffman and Delbruck model can describe well the relationship even in living cells.

Report

(3 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • Research Products

    (12 results)

All 2017 2016 2015 Other

All Journal Article (5 results) (of which Peer Reviewed: 4 results,  Open Access: 4 results,  Acknowledgement Compliant: 1 results) Presentation (4 results) (of which Int'l Joint Research: 2 results,  Invited: 3 results) Book (1 results) Remarks (2 results)

  • [Journal Article] Heterotrimeric G protein shuttling via Gip1 extends the dynamic range of eukaryotic chemotaxis.2016

    • Author(s)
      Kamimura, Y., Miyanaga, Y. and Ueda, M.
    • Journal Title

      Proc. Natl. Acad. Sci. USA.

      Volume: 113 Issue: 16 Pages: 4356-4361

    • DOI

      10.1073/pnas.1516767113

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Multi-state Transition Kinetics of Intracellular Signaling Molecules by Single-Molecule Imaging Analysis.2016

    • Author(s)
      Matsuoka, S., Miyanaga, Y. and Ueda, M.
    • Journal Title

      Methods in Molecular Biology,

      Volume: 1407 Pages: 361-379

    • DOI

      10.1007/978-1-4939-3480-5_25

    • ISBN
      9781493934782, 9781493934805
    • Related Report
      2016 Annual Research Report
  • [Journal Article] Compact Halo-Ligand Conjugated Quantum Dots for Multicolored Single-Molecule Imaging of Overcrowding GPCR Proteins on Cell Membrane2015

    • Author(s)
      Komatsuzaki, A., Ohyanagi, T., Tsukasaki, Y., Miyanaga, Y., Ueda, M. and Jin, T.
    • Journal Title

      Small

      Volume: 11 Issue: 12 Pages: 1396-1401

    • DOI

      10.1002/smll.201402508

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Integrin LFA-1 regulates cell adhesion via transient clutch formation2015

    • Author(s)
      Ishibashi, M., Miyanaga, Y., Matsuoka, S., Kozuka, J., Togashi, Y., Kinashi, T. and Ueda, M.
    • Journal Title

      Biochem. Biophys. Res. Commun.

      Volume: 464 Issue: 2 Pages: 459-466

    • DOI

      10.1016/j.bbrc.2015.06.155

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] A computational framework for bioimaging simulation2015

    • Author(s)
      M. Watabe, S. N. V. Arjuna, S. Fukushima, K. Iwamoto, J. Kozuka, S. Matsuoka, M. Ueda and K. Takahashi
    • Journal Title

      PLoS ONE

      Volume: 10 Issue: 7 Pages: e0130089-e0130089

    • DOI

      10.1371/journal.pone.0130089

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Automated single-molecule imaging analysis in living cells2017

    • Author(s)
      Ueda M
    • Organizer
      Single Molecule Biophysics 2017
    • Place of Presentation
      Aspen Center for Physics, Colorado, USA
    • Year and Date
      2017-01-08
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 細胞性粘菌の濃度勾配センシングと走化性運動2016

    • Author(s)
      上田 昌宏
    • Organizer
      日本微生物生態学会第31回大会シンポジウム「原生生物の環境センシングと運動」
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2016-10-22
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Single molecule analysis of intracellular signaling in eukaryotic chemotaxis2016

    • Author(s)
      Ueda M
    • Organizer
      Gordon Research Conference, Single Molecule Approaches to Biology
    • Place of Presentation
      University of Hong Kong, Hong Kong, China.
    • Year and Date
      2016-07-03
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Gradient sensing and directed cell migration ineukaryotic chemotaxis2015

    • Author(s)
      上田 昌宏
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学
    • Year and Date
      2015-09-13
    • Related Report
      2015 Research-status Report
    • Invited
  • [Book] 生体の科学, 66巻5号, 増大特集 『細胞シグナル操作法』2016

    • Author(s)
      松岡里実、上田昌宏
    • Total Pages
      2
    • Publisher
      医学書院
    • Related Report
      2016 Annual Research Report
  • [Remarks] 走化性細胞が応答範囲を拡張するメカニズム

    • URL

      http://www.riken.jp/pr/press/2016/20160407_1/

    • Related Report
      2016 Annual Research Report
  • [Remarks] 量子ドットプローブを用いたマルチカラー1分子蛍光イメージングを実現

    • URL

      http://www.bio.sci.osaka-u.ac.jp/newinfo/info82.html

    • Related Report
      2016 Annual Research Report 2015 Research-status Report

URL: 

Published: 2015-04-16   Modified: 2018-03-22  

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