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Development of automated numerical methods for analysis of morphogenesis and their application to chiral structure and motion

Research Project

Project/Area Number 15K14522
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Developmental biology
Research InstitutionNiigata University

Principal Investigator

Tamada Atsushi  新潟大学, 医歯学総合研究科, 客員研究員 (60270576)

Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2017: ¥390,000 (Direct Cost: ¥300,000、Indirect Cost: ¥90,000)
Fiscal Year 2016: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2015: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords成長円錐 / 神経突起 / キラリティ / 左右非対称性 / リース変換 / 微分干渉顕微鏡 / 構造テンソル / オプティカルフロー / 非対称性 / 光学フロー
Outline of Final Research Achievements

For investigating the mechanism of morphogenesis, it is necessary to quantitatively analyze the structure and motion of the cells. Here, in this study, we developed automated methods for imaging and analyzing of 3D structure and 4D motion of the cells. We developed three fundamental techniques including 1) Riesz transform-differential interference contrast microscopy for label-free 4D live imaging, 2) automated analysis of 3D cellular structure by the structure tensor and 3) automated analysis of 4D morphological changes by the multi-scale optical flow. By applying these techniques to neurons and cellular slime mold, we demonstrated that neuronal growth cones, growing neurites and migrating cellular slime mold show 3D chiral morphology and 4D spiral motion.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (11 results)

All 2018 2017 2016 2015

All Journal Article (3 results) (of which Peer Reviewed: 3 results,  Open Access: 3 results) Presentation (8 results) (of which Int'l Joint Research: 1 results,  Invited: 2 results)

  • [Journal Article] Growth cone phosphoproteomics reveals that GAP-43 phosphorylated by JNK is a marker of axon growth and regeneration2018

    • Author(s)
      Asami Kawasaki, Masayasu Okada, Atsushi Tamada, Shujiro Okuda, Motohiro Nozumi, Yasuyuki Ito, Daiki Kobayashi, Tokiwa Yamasaki, Ryo Yokoyama, Takeshi Shibata, Hiroshi Nishina, Yutaka Yoshida, Yukihiko Fujii, Kosei Takeuchi, and Michihiro Igarashi
    • Journal Title

      iScience

      Volume: 4

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Revealing chiral cell motility by 3D Riesz transform-differential interference contrast microscopy and computational kinematic analysis2017

    • Author(s)
      Tamada Atsushi、Igarashi Michihiro
    • Journal Title

      Nature Communications

      Volume: 8 Issue: 1 Pages: 2194-2194

    • DOI

      10.1038/s41467-017-02193-w

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Abnormalities in perineuronal nets and behavior in mice lacking CSGalNAcT1, a key enzyme in chondroitin sulfate synthesis2017

    • Author(s)
      Yoshioka Nozomu、Miyata Shinji、Tamada Atsushi、Watanabe Yumi、Kawasaki Asami、Kitagawa Hiroshi、Takao Keizo、Miyakawa Tsuyoshi、Takeuchi Kosei、Igarashi Michihiro
    • Journal Title

      Mol Brain

      Volume: 10 Issue: 1 Pages: 47-47

    • DOI

      10.1186/s13041-017-0328-5

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] Automated multidimensional image analysis for structures and functions of the nervous systems2018

    • Author(s)
      Atsushi Tamada, Michihiro Igarashi
    • Organizer
      The BRI International Symposium 2018
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Imaging and quantitative analysis of chiral cell motility and left-right asymmetry2017

    • Author(s)
      玉田篤史
    • Organizer
      第69回日本細胞生物学会大会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 多次元顕微鏡画像の自動解析により明らかとなった神経細胞のキラ ル運動特性2017

    • Author(s)
      玉田篤史、五十嵐道弘
    • Organizer
      第40回日本神経科学大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 3次元イメージングと画像解析により明らかになったキラルな細胞運動様式2017

    • Author(s)
      玉田篤史、五十嵐道弘
    • Organizer
      第39回神経組織培養研究会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 細胞の3次元形態・運動解析技術の開発2017

    • Author(s)
      玉田篤史、五十嵐道弘
    • Organizer
      第58回新潟生化学懇話会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 神経成長円錐の3次元イメージングとキネマティクス解析2016

    • Author(s)
      玉田篤史
    • Organizer
      第121回日本解剖学会
    • Place of Presentation
      ビッグパレットふくしま(福島県郡山市)
    • Year and Date
      2016-03-28
    • Related Report
      2015 Research-status Report
  • [Presentation] 分子のキラリティによる脳の左右非対称性形成機構2016

    • Author(s)
      玉田篤史
    • Organizer
      日本分子生物学会
    • Place of Presentation
      横浜
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] 顕微鏡画像を用いた神経細胞の構造および運動の自動数値解析手法の開発2015

    • Author(s)
      玉田篤史、五十嵐道弘
    • Organizer
      第38回日本神経科学大会
    • Place of Presentation
      神戸国際会議場(神戸市)
    • Year and Date
      2015-07-29
    • Related Report
      2015 Research-status Report

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Published: 2015-04-16   Modified: 2019-03-29  

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