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Stress field estimation in three-dimensional optic-cup by image-based modeling

Research Project

Project/Area Number 15K14534
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Developmental biology
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Okuda Satoru  国立研究開発法人理化学研究所, 多細胞システム形成研究センター, 基礎科学特別研究員 (80707836)

Co-Investigator(Kenkyū-buntansha) 橋本 敦史  京都大学, 教育学研究科, 助教 (80641753)
Co-Investigator(Renkei-kenkyūsha) EIRAKU Mototsugu  国立研究開発法人理化学研究所, 多細胞システム形成研究センター, チームリーダー (40415097)
MORI Shunsuke  国立研究開発法人理化学研究所, 多細胞システム形成研究センター, 研究員 (90733147)
Project Period (FY) 2015-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2016: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2015: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Keywords三次元バーテックスモデル / 器官形成 / バイオメカニクス / 3次元バーテックスモデル / バイオメカ二クス
Outline of Final Research Achievements

This study aims to develop a method to simulate tissue morphogenesis based on experimentally observed morphological data using the 3D vertex model. Moreover, by comparing the in-vivo and in-silico deformation processes quantitatively, we predicted several key mechanisms to drive the tissue morphogenesis. First, we deloped the mathematical model of cell apoptosis based on the 3D vertex model framework. Next, by applying the developed model to the optic-cup morphogenesis, we qualitatively predicted the mechanisms of the tissue morphogenesis.

Report

(3 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • Research Products

    (9 results)

All 2017 2016 2015

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Acknowledgement Compliant: 2 results) Presentation (6 results) (of which Int'l Joint Research: 2 results,  Invited: 2 results) Book (1 results)

  • [Journal Article] Modeling cell apoptosis for simulating three-dimensional multicellular morphogenesis based on a reversible network reconnection framework2016

    • Author(s)
      Satoru Okuda, Yasuhiro Inoue, Mototsugu Eiraku, Taiji Adachi, and Yoshiki Sasai
    • Journal Title

      Biomechanics and Modeling in Mechanobiology

      Volume: 未定印刷中 Issue: 4 Pages: 1-1

    • DOI

      10.1007/s10237-015-0724-7

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Three-dimensional vertex model for simulating multicellular morphogenesis2015

    • Author(s)
      Satoru Okuda, Yasuhiro Inoue, and Taiji Adachi
    • Journal Title

      Biophysics and Physicobiology

      Volume: 12 Issue: 0 Pages: 13-20

    • DOI

      10.2142/biophysico.12.0_13

    • NAID

      130005094557

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] 実器官の多細胞ダイナミクスを解析する汎用三次元バーテックスモデルの開発2017

    • Author(s)
      奥田覚,永樂元次
    • Organizer
      日本機械学会 第29回バイオエンジニアリング講演会
    • Place of Presentation
      ウィンク愛知(愛知県名古屋市)
    • Related Report
      2016 Annual Research Report
  • [Presentation] 多細胞の三次元組織形成シミュレーションのためのアポトーシスの数理モデル化2016

    • Author(s)
      奥田覚,井上康博,安達泰治,永樂元次
    • Organizer
      日本機械学会 第28回バイオエンジニアリング講演会
    • Place of Presentation
      東京工業大学(東京都・目黒区)
    • Year and Date
      2016-01-09
    • Related Report
      2015 Research-status Report
  • [Presentation] Mechanical regulatory mechanism of 3D multicellular dynamics during epithelial invagination2016

    • Author(s)
      Satoru Okuda, Mototsugu Eiraku
    • Organizer
      The 54th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Related Report
      2016 Annual Research Report
  • [Presentation] Mechanical regulatory mechanism of 3D multicellular dynamics during optic-cup morphogenesis2016

    • Author(s)
      Satoru Okuda, Mototsugu Eiraku
    • Organizer
      The 39th Annual Meeting of the Molecular biology Society of Japan
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Versatile modeling of three-dimensional multicellular morphogenesis: application to apically-convex invagination during optic-cup formation2015

    • Author(s)
      Satoru Okuda, Yasuhiro Inoue, Taiji Adachi, Yoshiki Sasai, Mototsugu Eiraku
    • Organizer
      The 26th CDB meeting: Mechanistic Perspectives of Multicellular Organization
    • Place of Presentation
      理化学研究所(兵庫県・神戸市)
    • Year and Date
      2015-09-08
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] "Vertex dynamics simulations of viscosity-dependent deformation during 3D multicellular morphogenesis2015

    • Author(s)
      Satoru Okuda, Yasuhiro Inoue, Mototsugu Eiraku, Taiji Adachi, Yoshiki Sasai
    • Organizer
      International Congress of Biorheology and 8th International Conference on Clinical Hemorheology
    • Place of Presentation
      Korea University, Korea
    • Year and Date
      2015-05-24
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research / Invited
  • [Book] 実験医学2015

    • Author(s)
      奥田覚,永楽元次
    • Total Pages
      4
    • Publisher
      羊土社
    • Related Report
      2015 Research-status Report

URL: 

Published: 2015-04-16   Modified: 2018-03-22  

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