• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Early steps prerequisite for evolution from aerobic eukaryotes to anaerobes

Research Project

Project/Area Number 15K14591
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Biodiversity/Systematics
Research InstitutionKyoto University

Principal Investigator

Kamikawa Ryoma  京都大学, 地球環境学堂, 助教 (40627634)

Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥2,990,000 (Direct Cost: ¥2,300,000、Indirect Cost: ¥690,000)
Fiscal Year 2017: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2016: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2015: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Keywordsミトコンドリア / 嫌気 / 原生生物 / 酸素 / 進化 / トランスクリプトーム / ミトコンドリアゲノム
Outline of Final Research Achievements

This study aimed to unveil early stages of adaptive evolution of eukaryotes to anaerobiosis, using a eukaryote that is capable of thriving in both aerobic and anaerobic conditions. Mitochondria-targeting proteins were identified by transcriptome analyses followed by localization studies. Comparative transcriptome analyses revealed that mitochondrial energy producing pathways are drastically different between aerobic and anaerobic conditions. Molecular phylogenetic analyses suggested those genes encoding the mitochondrial anaerobic energy production had been acquired by lateral transfers. On the basis of findings in this study, important steps for early stages of evolutionary adaptation to anaerobiosis in eukaryotes were suggested to be acquisition of genes for mitochondrial anaerobic energy production and transcriptional regulation of those genes in different oxygen concentrations.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (49 results)

All 2018 2017 2016 2015 Other

All Int'l Joint Research (8 results) Journal Article (17 results) (of which Int'l Joint Research: 8 results,  Peer Reviewed: 15 results,  Open Access: 11 results,  Acknowledgement Compliant: 8 results) Presentation (22 results) (of which Int'l Joint Research: 8 results,  Invited: 10 results) Remarks (2 results)

  • [Int'l Joint Research] Dalhousie University(Canada)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Dalhousie University(Canada)

    • Related Report
      2016 Research-status Report
  • [Int'l Joint Research] Philipps-Universitat Marburg(Germany)

    • Related Report
      2016 Research-status Report
  • [Int'l Joint Research] Charles University(チェコ)

    • Related Report
      2016 Research-status Report
  • [Int'l Joint Research] University of Arkansas(米国)

    • Related Report
      2016 Research-status Report
  • [Int'l Joint Research] Uppsala University(Sweden)

    • Related Report
      2016 Research-status Report
  • [Int'l Joint Research] Dalhousie University/British Columbia University(Canada)

    • Related Report
      2015 Research-status Report
  • [Int'l Joint Research] Phillipps Universitat Marburg(Germany)

    • Related Report
      2015 Research-status Report
  • [Journal Article] Phylogenomics Places Orphan Protistan Lineages in a Novel Eukaryotic Super-Group2018

    • Author(s)
      Brown Matthew W、Heiss Aaron A、Kamikawa Ryoma、Inagaki Yuji、Yabuki Akinori、Tice Alexander K、Shiratori Takashi、Ishida Ken-Ichiro、Hashimoto Tetsuo、Simpson Alastair G B、Roger Andrew J
    • Journal Title

      Genome Biology and Evolution

      Volume: 10 Issue: 2 Pages: 427-433

    • DOI

      10.1093/gbe/evy014

    • NAID

      120007134343

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The draft genome of Kipferlia bialata reveals reductive genome evolution in fornicate parasites2018

    • Author(s)
      Tanifuji G, Takabayashi S, Kume K, Takagi M, Nakayama T, Kamikawa R, Inagaki Y, Hashimoto T
    • Journal Title

      PLOS ONE

      Volume: 13 Issue: 3 Pages: e0194487-e0194487

    • DOI

      10.1371/journal.pone.0194487

    • NAID

      120007134280

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Growth characterization of non-photosynthetic diatoms, <i>Nitzschia</i> spp., inhabiting estuarine mangrove forests of Ishigaki Island, Japan2017

    • Author(s)
      Ishii K, Ryoma Kamikawa
    • Journal Title

      Plankton and Benthos Research

      Volume: 12 Issue: 3 Pages: 164-170

    • DOI

      10.3800/pbr.12.164

    • NAID

      130005998677

    • ISSN
      1880-8247, 1882-627X
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A Non-photosynthetic Diatom Reveals Early Steps of Reductive Evolution in Plastids2017

    • Author(s)
      Kamikawa R, Moog D, Zauner S, Tanifuji G, Ishida K, Miyashita H, Mayama S, Hashimoto T, Maier UG, Archibald JM, Inagaki Y
    • Journal Title

      Molecular Biology and Evolution

      Volume: 34 Issue: 9 Pages: 2355-2366

    • DOI

      10.1093/molbev/msx172

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Mitochondrial Genome Evolution and a Novel RNA Editing System in Deep-Branching Heteroloboseids2017

    • Author(s)
      Yang J, Harding T, Kamikawa R, Simpson AGB, Roger AJ
    • Journal Title

      Genome Biology and Evolution

      Volume: 9 Issue: 5 Pages: 1161-1174

    • DOI

      10.1093/gbe/evx086

    • NAID

      120006936398

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The symbiotic green alga in eggs of the endemic amphibian of Japan, Hynobius nigrescens2017

    • Author(s)
      Muto T, Nishikawa T, Ryoma Kamikawa, Miyashita H
    • Journal Title

      Phycological Research

      Volume: 65 Issue: 2 Pages: 171-174

    • DOI

      10.1111/pre.12173

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The Origin and Diversification of Mitochondria2017

    • Author(s)
      Roger AJ, Munoz-Gomez SA, Kamikawa R
    • Journal Title

      Current Biology

      Volume: 27 Issue: 21 Pages: R1177-R1192

    • DOI

      10.1016/j.cub.2017.09.015

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Organelles that illuminate the origins of Trichomonas hydrogenosomes and Giardia mitosomes2017

    • Author(s)
      Leger M, Kolisko M, Ryoma Kamikawa, Stairs CW, Kume K, Cepicka I, Silberman JD, Andersson JO, Xu F, Yabuki A, Zhang Q, Takishita K, Inagaki Y, Simpson AGB, Hashimoto T, Roger AJ
    • Journal Title

      Nature Ecology and Evolution

      Volume: 1 Issue: 4 Pages: 0092-0092

    • DOI

      10.1038/s41559-017-0092

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] The earliest stages of mitochondrial adaptation to low oxygen revealed in a novel rhizarian2016

    • Author(s)
      Gawryluk RM, Kamikawa R, Stairs CW, Silberman JD, Brown MW, Roger AJ
    • Journal Title

      Current Biology

      Volume: 26 Issue: 20 Pages: 2729-2738

    • DOI

      10.1016/j.cub.2016.08.025

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Mitochondrial genome of Palpitomonas bilix: derived genome structure and ancestral system for cytochrome c maturation2016

    • Author(s)
      Nishimura Y, Tanifuji G, Kamikawa R, Yabuki A, Hashimoto T, Inagaki Y
    • Journal Title

      Genome Biology and Evolution

      Volume: 8 Issue: 10 Pages: 3090-3098

    • DOI

      10.1093/gbe/evw217

    • NAID

      120007129285

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Group II intron-mediated trans-splicing in the gene-rich mitochondrial genome of an enigmatic eukaryote, Diphylleia rotans.2016

    • Author(s)
      Kamikawa R, Shiratori T, Ishida K, Miyashita H, Roger AJ.
    • Journal Title

      Genome Biology and Evolution

      Volume: 8 Issue: 2 Pages: 458-466

    • DOI

      10.1093/gbe/evw011

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] 光合成能力を失った種と葉緑体の進化・多様性 ~環境と栄養性の進化関係の解明へ向けて~2016

    • Author(s)
      神川龍馬
    • Journal Title

      生物の科学 遺伝

      Volume: 70 Pages: 115-200

    • Related Report
      2015 Research-status Report
  • [Journal Article] Proposal of a Twin Arginine Translocator system-mediated constraint against loss of ATP synthase genes from nonphotosynthetic plastid genomes2015

    • Author(s)
      Kamikawa R, Tanifuji G, Ishikawa SA, Ishii K, Matsuno Y, Onodera NT, Ishida K, Hashimoto T, Miyashita H, Mayama S, Inagaki Y.
    • Journal Title

      Molecular Biology and Evolution

      Volume: 32 Issue: 10 Pages: 2598-2604

    • DOI

      10.1093/molbev/msv134

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Discovery of PPi-type Phosphoenolpyruvate carboxykinase genes in eukaryotes and bacteria.2015

    • Author(s)
      Chiba Y, Kamikawa R, Nakada-Tsukui K, Saito-Nakano Y, Nozaki T
    • Journal Title

      Journal of Biological Chemistry

      Volume: 290 Issue: 39 Pages: 23960-23970

    • DOI

      10.1074/jbc.m115.672907

    • NAID

      120007136108

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Multiple conversion between the genes encoding bacterial class-I release factors.2015

    • Author(s)
      Ishikawa SA, Kamikawa R, Inagaki Y.
    • Journal Title

      Scientific Resports

      Volume: 5 Issue: 1 Pages: 12406-12406

    • DOI

      10.1038/srep12406

    • NAID

      120005822775

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] The mitochondrial genomes of a myxozoan genus Kudoa are extremely divergent in Metazoa.2015

    • Author(s)
      Takeuchi F, Sekizuka T, Ogasawara Y, Yokoyama H, Kamikawa R, Inagaki Y, Nozaki T, Sugita-Konishi Y, Ohnishi T, Kuroda M.
    • Journal Title

      PLoS One

      Volume: 10 Issue: 7 Pages: e0132030-e0132030

    • DOI

      10.1371/journal.pone.0132030

    • NAID

      120005763404

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Nitzschia、光合成やめるってよ2015

    • Author(s)
      神川龍馬
    • Journal Title

      藻類

      Volume: 63 Pages: 196-200

    • Related Report
      2015 Research-status Report
  • [Presentation] 非光合成性珪藻類葉緑体トリオースリン酸輸送体の基質特異性と紅藻類由来葉緑体の進化2018

    • Author(s)
      神川龍馬、Daniel Moog、野澤彰、戸澤譲
    • Organizer
      日本藻類学会第42回大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 非光合成性珪藻類葉緑体のゲノム進化2017

    • Author(s)
      神川龍馬
    • Organizer
      第41回日本藻類学会
    • Place of Presentation
      高知大学
    • Year and Date
      2017-03-23
    • Related Report
      2016 Research-status Report
  • [Presentation] 光合成能喪失に伴う葉緑体ゲノム進化2017

    • Author(s)
      神川龍馬
    • Organizer
      第90回日本細菌学会総会
    • Place of Presentation
      仙台国際センター
    • Year and Date
      2017-03-19
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] “非”光合成性珪藻類:進化・多様性・応用への展望2017

    • Author(s)
      神川龍馬
    • Organizer
      平成29年度 マリンバイオテクノロジー学会「若手の会シンポジウム」
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 藻類が光合成を捨てるとき2017

    • Author(s)
      神川龍馬
    • Organizer
      第11回ゲノム微生物学会若手の会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] イントロダクション:現存真核生物の多様性2017

    • Author(s)
      神川龍馬
    • Organizer
      第19回進化学会シンポジウム
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Reductive evolution of plastids in diatoms after loss of photosynthesis2017

    • Author(s)
      Ryoma Kamikawa
    • Organizer
      International Phycological Conference
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Evolutionary cross talk between the non-photosynthetic plastids and the cytosol of Nitzschia2017

    • Author(s)
      Ryoma Kamikawa, Daniel Moog, Akira Nozawa, Yuzuru Tozawa
    • Organizer
      The IVth Molecular Life of Diatoms
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Giardiaに近縁な自由生活性鞭毛虫Dysnectes brevisのMRO機能の推測2017

    • Author(s)
      井上貴史、谷藤吾朗、神川龍馬、久米慶太郎、稲垣祐司、橋本哲男
    • Organizer
      第86回日本寄生虫学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] ランブル鞭毛虫近縁種における分割イントロン(splintron)の探索:splintronの普遍性と成立過程の解明に向けて2017

    • Author(s)
      杉崎真、神川龍馬、稲垣祐司、橋本哲男、谷藤吾朗
    • Organizer
      第86回日本寄生虫学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 光合成能の喪失がもたらす真核生物進化2016

    • Author(s)
      神川龍馬
    • Organizer
      水圏微生物のエネルギー利用戦略とその相互作用に関する研究会
    • Place of Presentation
      国立遺伝学研究所
    • Year and Date
      2016-11-03
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] Rare loss of the Calvin Benson cycle in non-photosynthetic plastids2016

    • Author(s)
      Ryoma Kamikawa, Zauner S, Moog D, Tanifuji G, Ishida KI, Mayama S, Hashimoto T, Archibald JM, Maier UG, Miyashita H,Inagaki Y
    • Organizer
      ICES2016 Kyoto
    • Place of Presentation
      京都府立大学
    • Year and Date
      2016-09-10
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] Plastid comparative genomics elucidates multiple independent losses of photosynthesis in Cryptomonas (Cryptophyta)2016

    • Author(s)
      Tanifuji G, Ryoma Kamikawa, Moore CE, Mills T, Inagaki Y, Hashimoto T, Archibald JM
    • Organizer
      ICES2016 Kyoto
    • Place of Presentation
      京都府立大学
    • Year and Date
      2016-09-10
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] インビジブル:色を捨てた"藻類"たち2016

    • Author(s)
      神川龍馬
    • Organizer
      第18回進化学会WS「プロティストワールド~アプローチの多様化がもたらすもの~」
    • Place of Presentation
      東京工業大学
    • Year and Date
      2016-08-25
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] 非光合成性珪藻類無色葉緑体における機能2016

    • Author(s)
      神川龍馬、Stefan Zauner、Uwe Maier、Daniel Moog、John M. Archibald、Andrew J. Roger、真山 茂樹、石田 健一郎、宮下 英明 、稲垣 祐司
    • Organizer
      第40回藻類学会
    • Place of Presentation
      日本歯科大、東京
    • Year and Date
      2016-03-18
    • Related Report
      2015 Research-status Report
  • [Presentation] 新奇ケルコゾア生物Brevimastigomonas sp. KY003株の持つ新たなミトコンドリア様オルガネラ2015

    • Author(s)
      松野佑成、石井健一郎、宮下英明、神川龍馬
    • Organizer
      第30回日本微生物生態学会
    • Place of Presentation
      土浦亀城プラザ、茨城
    • Year and Date
      2015-10-17
    • Related Report
      2015 Research-status Report
  • [Presentation] The dynamics of mitochondrial metabolism .in a cercozoan capable of growth in aerobic and low-oxygen conditions.2015

    • Author(s)
      Ryoma Kamikawa
    • Organizer
      2nd International Symposium Matryoshka-type Evolution of Eukaryotic Cells
    • Place of Presentation
      筑波大学、茨城
    • Year and Date
      2015-09-30
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Convergent Evolution of Carbon Metabolisms after Loss of Photosynthesis.2015

    • Author(s)
      Ryoma Kamikawa, Yuji Inagaki
    • Organizer
      2nd International Symposium Matryoshka-type Evolution of Eukaryotic Cells
    • Place of Presentation
      筑波大学、茨城
    • Year and Date
      2015-09-30
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Rhopalodia科珪藻における細胞内共生シアノバクテリアのゲノム縮退進化2015

    • Author(s)
      中山卓郎、神川龍馬、谷藤吾朗、稲垣祐司
    • Organizer
      第79回日本植物学会
    • Place of Presentation
      新潟コンベンションセンター、新潟
    • Year and Date
      2015-09-08
    • Related Report
      2015 Research-status Report
  • [Presentation] The dynamics of mitochondrial metabolism in a cercozoan capable of growth in aerobic and low-oxygen conditions.2015

    • Author(s)
      Ryoma Kamikawa
    • Organizer
      VIIECOP-ISOP joint meeting
    • Place of Presentation
      Seville, Spain
    • Year and Date
      2015-09-05
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] ヌクレオモルフをもつ2 種の未記載渦鞭毛藻: 真核藻の細胞内共生を介し た葉緑体成立過程を解き 明かす新たなモデルとし て2015

    • Author(s)
      皿井千裕、谷藤吾朗、 中山卓郎、神川龍馬、 高橋和也、石田健一郎、 岩滝光儀、稲垣祐司.
    • Organizer
      ワークショップ 日本進化学会第17回大会
    • Place of Presentation
      中央大、東京
    • Year and Date
      2015-08-21
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] Two cercozoans from low-oxygen environments reveal the early stages of mitochondrial adaptation to anaerobiosis2015

    • Author(s)
      Ryoma Kamikawa
    • Organizer
      Integrated Microbial Biodiversity Program meeting, Canadian Institute for Advanced Research
    • Place of Presentation
      Victoria, Canada
    • Year and Date
      2015-05-26
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research / Invited
  • [Remarks] Ryoma's website

    • URL

      https://sites.google.com/site/ryomakamikawa/

    • Related Report
      2016 Research-status Report
  • [Remarks] Ryomas website

    • URL

      https://sites.google.com/site/ryomakamikawa/Home

    • Related Report
      2015 Research-status Report

URL: 

Published: 2015-04-16   Modified: 2022-02-22  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi