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Developing methods for analysis of ancient pathogens using next-generation sequencing

Research Project

Project/Area Number 15K14615
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Physical anthropology
Research InstitutionNational Museum of Nature and Science, Tokyo

Principal Investigator

SHINODA Ken-ichi  独立行政法人国立科学博物館, その他部局等, 研究調整役 (30131923)

Co-Investigator(Kenkyū-buntansha) 神澤 秀明  独立行政法人国立科学博物館, 人類研究部, 研究員 (80734912)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2017: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2016: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2015: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywords古代DNA解析 / メタゲノム解析 / 次世代シークエンサー / 縄文人 / 歯石 / 江戸時代人 / バクテリアDNA / 古代ゲノム解析 / 細菌 / メタゲノム / 口腔細菌 / 次世代シークエンサ / 古代DNA解析 / バクテリアDNA
Outline of Final Research Achievements

DNA analysis of pathogenic microorganisms and tartar from ancient human remains can help in obtaining information such as the origins of diseases and the reproduction of oral environment, which could not be studied by conventional methods. In this study, we pursued the possibility of analyzing ancient pathogens based on the genomic information extracted from human remains. Genomic analysis of pathogenic bacteria failed to produce clear results; however, for the Jomon people, who were considered to be affected by polio, genomic analysis revealed the possibility of them having muscular dystrophy.
In the genomic analysis of oral bacteria of the Jomon and the Edo people, bacterial flora differed between the two, indicating the possibility of a relationship between food intake and oral bacterial flora.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (21 results)

All 2018 2017 2016 2015 Other

All Int'l Joint Research (1 results) Journal Article (8 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 5 results,  Open Access: 5 results) Presentation (11 results) (of which Int'l Joint Research: 1 results,  Invited: 6 results) Book (1 results)

  • [Int'l Joint Research] The University of Adelaide(オーストラリア)

    • Related Report
      2015 Research-status Report
  • [Journal Article] Ethnic derivation of the Ainu inferred from ancient mitochondrial DNA data2018

    • Author(s)
      Adachi N, Kakuda T, Takahashi R, Kanzawa-Kiriyama H, Shinoda K
    • Journal Title

      American Journal of Physical Anthropology

      Volume: 165 Issue: 1 Pages: 139-148

    • DOI

      10.1002/ajpa.23338

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Mitochondrial DNA analysis of human skeletal remains excavated from the Iwashita Cave and Shimo-motoyama rock shelter sites2017

    • Author(s)
      篠田 謙一, 神澤 秀明, 角田 恒雄, 安達 登
    • Journal Title

      Anthropological Science (Japanese Series)

      Volume: 125 Issue: 1 Pages: 49-63

    • DOI

      10.1537/asj.170509

    • NAID

      130006832294

    • ISSN
      1344-3992, 1348-8813
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A partial nuclear genome of the Jomons who lived 3000 years ago in Fukushima, Japan.2017

    • Author(s)
      Kanzawa-Kiriyama H, Kryukov K, Jinam TA, Hosomichi K, Saso A, Suwa G, Ueda S, Yoneda M, Tajima A, Shinoda KI, Inoue I, Saitou N. A partial nuclear genome of the Jomons who lived 3000 years ago in Fukushima, Japan
    • Journal Title

      J Hum Genetics

      Volume: 印刷中 Issue: 2 Pages: 213-221

    • DOI

      10.1038/jhg.2016.110

    • NAID

      40021064864

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] 日本人の起源に関する最近のDNA人類学の動向2017

    • Author(s)
      篠田謙一
    • Journal Title

      岩波科学

      Volume: 87 Pages: 162-165

    • Related Report
      2016 Research-status Report
  • [Journal Article] 人類史研究の最前線 -化石とゲノムの研究はどこに向かうのか-.2016

    • Author(s)
      篠田謙一
    • Journal Title

      生物の科学遺伝

      Volume: 70 Pages: 442-445

    • Related Report
      2016 Research-status Report
  • [Journal Article] 遺伝情報から見た日本人の起源と成立の過程2015

    • Author(s)
      篠田謙一
    • Journal Title

      細胞工学

      Volume: 34 Pages: 902-905

    • Related Report
      2015 Research-status Report
  • [Journal Article] Human genetic diversity in the Japanese Archipelago: dual structure and beyond2015

    • Author(s)
      Jinam A.T., Kanzawa-Kiriyama H., Saitou N.
    • Journal Title

      Genes & Genetic Systems

      Volume: 90 Issue: 3 Pages: 147-152

    • DOI

      10.1266/ggs.90.147

    • NAID

      130005105466

    • ISSN
      1341-7568, 1880-5779
    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Unique characteristics of the Ainu population in Northern Japan2015

    • Author(s)
      Jinam A.T., Kanzawa-Kiriyama H., Inoue I., Tokunaga K., Omoto K., Saitou N. 2015
    • Journal Title

      Journal of human genetics,

      Volume: 60 Pages: 565-571

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] Analysis of the ancient human genome2017

    • Author(s)
      篠田謙一
    • Organizer
      第71回日本人類学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] ゲノムから探る日本人の成り立ち2017

    • Author(s)
      篠田謙一
    • Organizer
      第9回泌尿器抗加齢医学研究会.
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 古代ゲノムで読む日本人の起源と成立2016

    • Author(s)
      篠田謙一
    • Organizer
      平成28年動物学会近畿支部秋の公開講演会
    • Place of Presentation
      京都大学(京都府、京都市)
    • Year and Date
      2016-09-10
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] DNAで探る人類の拡散と日本人のルーツ2016

    • Author(s)
      篠田謙一
    • Organizer
      読売テクノフォーラム
    • Place of Presentation
      読売新聞本社(東京都、千代田区)
    • Year and Date
      2016-09-09
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] DNA分析で知る日本列島住民の起源と成り立ち2016

    • Author(s)
      篠田謙一
    • Organizer
      基盤研セミナー
    • Place of Presentation
      医薬基盤・健康・栄養研究所(大阪府、吹田市)
    • Year and Date
      2016-08-05
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] DNAから見た日本人の形成と北東アジア2015

    • Author(s)
      篠田謙一
    • Organizer
      東北大学東北アジア研究センター創立20周年記念国際シンポジウム
    • Place of Presentation
      仙台国際センター(宮城県・仙台市)
    • Year and Date
      2015-12-05
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] DNAで読む日本人の形成史2015

    • Author(s)
      篠田謙一
    • Organizer
      國學院大學国際研究フォーラム「日本文化」研究の展望.
    • Place of Presentation
      國學院大學渋谷キャンパス 学術メディアセンター(東京都・渋谷区)
    • Year and Date
      2015-10-25
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] DNA analysis of Kaizuka skeletal remains excavated from Ie Island in Okinawa.2015

    • Author(s)
      Shinoda, K., Kanzawa-Kiriyama, H., Adachi, N., Kakuda, T., Tamae, T., Doi, N.
    • Organizer
      第69回日本人類学会総会
    • Place of Presentation
      産業技術総合研究所 臨海副都心センター(東京都・港区)
    • Year and Date
      2015-10-10
    • Related Report
      2015 Research-status Report
  • [Presentation] 古代日本列島人の核ゲノム解析(第3報)2015

    • Author(s)
      神澤秀明,Kirill Kryukov,Timothy Jinam,佐藤孝雄,奈良貴史,安達登,細道一善,田嶋敦,井ノ上逸朗,斎藤成也,篠田謙一
    • Organizer
      第69回日本人類学会大会
    • Place of Presentation
      産業技術総合研究所 臨海副都心センター(東京都・港区)
    • Year and Date
      2015-10-10
    • Related Report
      2015 Research-status Report
  • [Presentation] 縄文人核ゲノム分析から見た日本列島人の成立史2015

    • Author(s)
      神澤秀明,Kirill Kryukov,Timothy Jinam,細道一善,佐宗亜衣子,諏訪元,植田信太郎,米田穣,田嶋敦,井ノ上逸朗,篠田謙一,斎藤成也
    • Organizer
      第17回日本進化学会大会
    • Place of Presentation
      中央大学(東京都・文京区)
    • Year and Date
      2015-08-20
    • Related Report
      2015 Research-status Report
  • [Presentation] 縄文人核ゲノムから見る東ユーラシア人の成立史2015

    • Author(s)
      神澤秀明
    • Organizer
      第4回NGS現場の会
    • Place of Presentation
      つくば国際会議場(茨城県・つくば市)
    • Year and Date
      2015-06-03
    • Related Report
      2015 Research-status Report
  • [Book] DNAで語る日本人起源論2015

    • Author(s)
      篠田謙一
    • Total Pages
      245
    • Publisher
      岩波書店
    • Related Report
      2015 Research-status Report

URL: 

Published: 2015-04-16   Modified: 2019-03-29  

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