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Exploring of an impact of lysine acetylation in RNA polymerase on transcription

Research Project

Project/Area Number 15K14685
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Applied microbiology
Research InstitutionThe University of Tokyo

Principal Investigator

Kosono Saori  東京大学, 生物生産工学研究センター, 特任准教授 (90321760)

Co-Investigator(Kenkyū-buntansha) 小倉 光雄  東海大学, 海洋研究所, 教授 (80204163)
Co-Investigator(Renkei-kenkyūsha) YOSHIKAWA Hirofumi  東京農業大学, 応用生物科学部, 教授 (50175676)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2016: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Fiscal Year 2015: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywordsリジンアセチル化 / RNAポリメラーゼ / ECFシグマ因子 / 転写 / Bacillus subtilis / アセチル化 / 枯草菌
Outline of Final Research Achievements

A possible impact of lysine acetylation in RNA polymerase (RNAP) on transcription was explored. ECF-type SigX-dependent transcription is induced by glucose in Bacillus subtilis. We found that addition of glucose increased lysine acetylation in RNAP and its holoenzyme formation with SigX. Scanning mutagenesis found that acetylation mimic (KQ) mutation of an acetylation site in the beta subunit enhanced glucose induction (GI) of SigX-dependent transcription. Non-acetylation mimic (KR) mutation of the same lysine residue did not affect GI, suggesting that acetylation at the lysine residue was likely involved in GI. This research raised a possibility that lysine acetylation may impact on transcription via modulating holoenzyme formation of RNAP with specific sigma factors.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (38 results)

All 2018 2017 2016 2015

All Journal Article (8 results) (of which Peer Reviewed: 8 results,  Open Access: 3 results,  Acknowledgement Compliant: 2 results) Presentation (30 results) (of which Int'l Joint Research: 7 results,  Invited: 4 results)

  • [Journal Article] Crystal structure of the 2-iminoglutarate-bound complex of glutamate dehydrogenase from Corynebacterium glutamicum.2017

    • Author(s)
      Tomita T, Yin L, Nakamura S, Kosono S, Kuzuyama T, Nishiyama M.
    • Journal Title

      FEBS Lett

      Volume: 591 Issue: 11 Pages: 1611-1622

    • DOI

      10.1002/1873-3468.12667

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of lysine acetylation of a phosphoenolpyruvate carboxylase involved in glutamate overproduction in Corynebacterium glutamicum2017

    • Author(s)
      Nagano-Shoji M, Hamamoto Y, Mizuno Y, Yamada A, Kikuchi M, Shirouzu M, Umehara T, Yoshida M, Nishiyama M, Kosono S
    • Journal Title

      Mol Microbiol.

      Volume: 印刷中 Issue: 4 Pages: 677-689

    • DOI

      10.1111/mmi.13658

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Effect of lysine succinylation on the regulation of 2-oxoglutarate dehydrogenase inhibitor, OdhI, involved in glutamate production in Corynebacterium glutamicum.2017

    • Author(s)
      Komine-Abe A, Nagano-Shoji M, Kubo S, Kawasaki H, Yoshida M, Nishiyama M, Kosono S.
    • Journal Title

      Biosci Biotechnol Biochem

      Volume: 81 Issue: 11 Pages: 2130-2138

    • DOI

      10.1080/09168451.2017.1372182

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dual regulation of Bacillus subtilis kinB gene encoding a sporulation trigger by SinR through transcription repression and positive stringent transcription control2017

    • Author(s)
      Fujita Y, Ogura M, Nii S and Hirooka K
    • Journal Title

      Frontiers in Microbiology

      Volume: 8 Pages: 2502-2502

    • DOI

      10.3389/fmicb.2017.02502

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Novel stand-alone RAM domain protein-mediated catalytic control of anthranilate phosphoribosyltransferase in tryptophan biosynthesis in Thermus thermophilus.2017

    • Author(s)
      Kubota T, Matsushita H, Tomita T, Kosono S, Yoshida M, Kuzuyama T, Nishiyama M.
    • Journal Title

      Extremophiles

      Volume: 21 Issue: 1 Pages: 73-83

    • DOI

      10.1007/s00792-016-0884-0

    • Related Report
      2016 Research-status Report
    • Peer Reviewed
  • [Journal Article] Protein acetylation involved in streptomycin biosynthesis in Streptomyces griseus.2017

    • Author(s)
      Ishigaki Y, Akanuma G, Yoshida M, Horinouchi S, Kosono S, Ohnishi Y.
    • Journal Title

      J. Proteomics

      Volume: 155 Pages: 63-72

    • DOI

      10.1016/j.jprot.2016.12.006

    • Related Report
      2016 Research-status Report
    • Peer Reviewed
  • [Journal Article] Altered acetylation and succinylation profiles in Corynebacterium glutamicum in response to conditions inducing glutamate overproduction.2016

    • Author(s)
      Mizuno Y., Nagano-Shoji M., Kubo S., Kawamura Y., Yoshida A., Kawasaki H., Nishiyama M., Yoshida M. and Kosono S.
    • Journal Title

      MicrobiologyOpen

      Volume: 5 Issue: 1 Pages: 152-173

    • DOI

      10.1002/mbo3.320

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Changes in the acetylome and succinylome of Bacillus subtilis in response to carbon source.2015

    • Author(s)
      Kosono S., Tamura M., Suzuki S., Kawamura Y., Yoshida A., Nishiyama M., Yoshida M.
    • Journal Title

      PLoS One

      Volume: 10 Issue: 6 Pages: e0131169-e0131169

    • DOI

      10.1371/journal.pone.0131169

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Corynebacterium glutamicumにおけるタンパク質アシル化修飾研究の現状と展望2018

    • Author(s)
      古園さおり
    • Organizer
      日本農芸化学会2018年度大会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 枯草菌EF-Tuのアシル化修飾制御機構の解析2018

    • Author(s)
      近藤直子、鈴木祥太、吉田稔、西山真、古園さおり
    • Organizer
      日本農芸化学会2018年度大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Corynebacterium glutamicum中央代謝酵素間におけるメタボロン形成の探索と解析2018

    • Author(s)
      山﨑史、村井恵一、吉田稔、西山真、古園さおり
    • Organizer
      日本農芸化学会2018年度大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Corynebacterium glutamicum由来PDH-ODH超複合体のサブユニット構造解析2018

    • Author(s)
      衣川寛知、小峰理乃、西山真、古園さおり
    • Organizer
      日本農芸化学会2018年度大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Corynebacterium glutamicumにおける2-オキソグルタル酸デヒドロゲナーゼ制御因子OdhIのアシル化部位の機能解析2017

    • Author(s)
      阿部理乃、西山真、古園さおり
    • Organizer
      日本農芸化学会2017年度大会
    • Place of Presentation
      京都女子大学(京都府京都市)
    • Year and Date
      2017-03-17
    • Related Report
      2016 Research-status Report
  • [Presentation] Corynebacterium glutamicum由来Phosphoenolpyruvate carboxylaseにおけるPup化修飾の機能解析2017

    • Author(s)
      濱本勇磨、永野愛、西山真、古園さおり
    • Organizer
      日本農芸化学会2017年度大会
    • Place of Presentation
      京都女子大学(京都府京都市)
    • Year and Date
      2017-03-17
    • Related Report
      2016 Research-status Report
  • [Presentation] 微生物代謝に関わるタンパク質アシル化修飾研究の現状と展望2017

    • Author(s)
      古園さおり
    • Organizer
      第11回日本ゲノム微生物学会年会
    • Place of Presentation
      慶應義塾大学(神奈川県藤沢市)
    • Year and Date
      2017-03-02
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] Exploration of the impact of protein acylation in elongation factor Tu in Bacillus subtilis2017

    • Author(s)
      Kosono S, Suzuki S, Kondo N, Nishiyama M.
    • Organizer
      19th International Conference on Bacilli and Gram-positive bacteria
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Exploring the impact of protein acylation on the biology of Corynebacterium glutamicum:2017

    • Author(s)
      Kosono S.
    • Organizer
      US-Japan Joint Seminar on Microbial Biotechnology
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Protein acylation involved in the regulation of biological function and metabolism in Corynebacterium glutamicum2017

    • Author(s)
      Kosono S.
    • Organizer
      Italy-Japan Joint Symposium. New Trends in Enzyme and Microbial Science in the Translational Biology Era
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Corynebacterium glutamicumのグルタミン酸生産に関わるメタボロンの探索と解析2017

    • Author(s)
      山﨑史、村井恵一、 西山真、古園さおり
    • Organizer
      第32回(2017年度)日本放線菌学会大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Corynebacterium glutamicum由来PDH-ODH超複合体のサブユニット構造解析2017

    • Author(s)
      衣川寛知、小峰(阿部)理乃、西山真、古園さおり
    • Organizer
      第10回北陸合同バイオシンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] NaClは枯草菌マクロコロニー形成を促進し、YfjD/E/Fはそれに必要である2017

    • Author(s)
      小倉光雄
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Characterization of lysine acetylation in phosphoenolpyruvate carboxylase involved in glutamate overproduction in Corynebacterium glutamicum2016

    • Author(s)
      Megumi Nagano, Yuta Mizuno, Ayuka Yamada, Masaki Kikuchi, Mikako Shirouzu, Takeshi Umehara, Minoru Yoshida, Makoto Nishiyama, Saori Kosono
    • Organizer
      2nd Conference on Post-Translational Modifications in Bacteria (PTM2016)
    • Place of Presentation
      Ecole Normale Superieure of Lyon (France)
    • Year and Date
      2016-10-19
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] 細菌におけるタンパク質アシル化修飾研究の現状と展望2016

    • Author(s)
      古園さおり
    • Organizer
      第177回日本農芸化学会中部支部例会ミニシンポジウム
    • Place of Presentation
      名古屋大学(愛知県名古屋市)
    • Year and Date
      2016-09-24
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] Analysis of Protein Acylation on Enzymes Involved in Branched-Chain Amino Acid Biosynthesis in Thermus thermophilus.2016

    • Author(s)
      Ayako YOSHIDA, Makoto NISHIYAMA, Minoru YOSHIDA, Saori KOSONO
    • Organizer
      11th International Congress on Extremophiles
    • Place of Presentation
      京都大学(京都府京都市)
    • Year and Date
      2016-09-12
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] 翻訳因子EF-Tuにおけるアシル化修飾の機能解析2016

    • Author(s)
      近藤直子、鈴木祥太、西山真、古園さおり
    • Organizer
      2016年度グラム陽性細菌ゲノム機能会議
    • Place of Presentation
      KKRホテル熱海(静岡県熱海市)
    • Year and Date
      2016-08-28
    • Related Report
      2016 Research-status Report
  • [Presentation] Corynebacterium glutamicum由来ODH/PDH-E2サブユニットのアセチル化部位の機能解析2016

    • Author(s)
      阿部理乃、久保翔世、永野愛、川崎寿、吉田稔、西山真、古園さおり
    • Organizer
      日本農芸化学会2016年度大会
    • Place of Presentation
      札幌コンベンションセンター(北海道・札幌市)
    • Year and Date
      2016-03-27
    • Related Report
      2015 Research-status Report
  • [Presentation] Corynebacterium glutamicum由来ホスホエノールピルビン酸カルボキシラーゼ (PEPC)のアセチル化制御はグルタミン酸生産に重要である。2016

    • Author(s)
      永野愛、山田鮎果、水野裕太、菊地正樹、白水美香子、梅原崇史、吉田彩子、吉田稔、西山真、古園さおり
    • Organizer
      日本農芸化学会2016年度大会
    • Place of Presentation
      札幌コンベンションセンター(北海道・札幌市)
    • Year and Date
      2016-03-27
    • Related Report
      2015 Research-status Report
  • [Presentation] 枯草菌EF-Tuのアシル化修飾機構および制御機構の解析2016

    • Author(s)
      鈴木祥太、吉田稔、西山真、古園さおり
    • Organizer
      日本農芸化学会2016年度大会
    • Place of Presentation
      札幌コンベンションセンター(北海道・札幌市)
    • Year and Date
      2016-03-27
    • Related Report
      2015 Research-status Report
  • [Presentation] 枯草菌ECFシグマ因子SigXのグルコース依存的な活性化に関わるRNAポリメラーゼのアセチル化2016

    • Author(s)
      米沢祐大、小倉光雄、鈴木祥太、吉田彩子、朝井計、吉田稔、西山真、古園さおり
    • Organizer
      日本農芸化学会2016年度大会
    • Place of Presentation
      札幌コンベンションセンター(北海道・札幌市)
    • Year and Date
      2016-03-27
    • Related Report
      2015 Research-status Report
  • [Presentation] Protein lysine acetylation profile of a plasmid-free and pCAR1-harbouring Pseudomonas putida KT24402016

    • Author(s)
      ヴァシレヴァ デリアナ、水口千穂、古園さおり、吉田稔、岡田憲典、野尻秀昭
    • Organizer
      日本農芸化学会2016年度大会
    • Place of Presentation
      札幌コンベンションセンター(北海道・札幌市)
    • Year and Date
      2016-03-27
    • Related Report
      2015 Research-status Report
  • [Presentation] 山本 寛之、吉田 彩子、富田 武郎、古園 さおり、葛山 智久、西山 真2016

    • Author(s)
      Thermus thermophilusにおいてアセチル化を受けるCoAトランスフェラーゼの機能と制御機構の解析
    • Organizer
      日本農芸化学会2016年度大会
    • Place of Presentation
      札幌コンベンションセンター(北海道・札幌市)
    • Year and Date
      2016-03-27
    • Related Report
      2015 Research-status Report
  • [Presentation] Protein acylation: a post-translational modification in response to nutrient and metabolism.2016

    • Author(s)
      Saori Kosono
    • Organizer
      異分野融合ワークショップ「微生物生命システム研究と合成生物学 の融合」
    • Place of Presentation
      奈良先端科学技術大学院大学(奈良県・生駒市)
    • Year and Date
      2016-03-17
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] Change of protein acyl modifications in response to glutamate overproduction in Corynebacterium glutamicum2015

    • Author(s)
      Saori Kosono
    • Organizer
      東京大学生物生産工学研究センター国際シンポジウム「微生物の環境への応答と適応、そして進化」
    • Place of Presentation
      東京大学(東京都・文京区)
    • Year and Date
      2015-10-21
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Corynebacterium glutamicumにおける短鎖アシル化修飾を介したホスホエノールピルビン酸カルボキシラーゼ(PEPC)の機能調節2015

    • Author(s)
      永野愛、水野裕太、西山真、古園さおり
    • Organizer
      日本農芸化学会関東支部2015年度支部大会
    • Place of Presentation
      お茶の水女子大学(東京都・文京区)
    • Year and Date
      2015-09-26
    • Related Report
      2015 Research-status Report
  • [Presentation] 枯草菌EF-Tuのアシル化修飾による翻訳制御機構の解析2015

    • Author(s)
      鈴木祥太、古園さおり
    • Organizer
      日本農芸化学会関東支部2015年度支部大会
    • Place of Presentation
      お茶の水女子大学(東京都・文京区)
    • Year and Date
      2015-09-26
    • Related Report
      2015 Research-status Report
  • [Presentation] Altered protein acetylation and succinylation profiles in Corynebacterium glutamicum in response to L-glutamate overproduction2015

    • Author(s)
      Saori Kosono, Yuta Mizuno, Megumi Nagano-Shoji, Shosei Kubo, Yumi Kawamura, Ayako Yoshida, Hisashi Kawasaki, Makoto Nishiyama, and Minoru Yoshida
    • Organizer
      第18回日本ドイツ酵素工学ワークショップ
    • Place of Presentation
      京都大学(京都府・京都市)
    • Year and Date
      2015-09-14
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Corynebacterium glutamicumにおける短鎖アシル化修飾を介したホスホエノールピルビン酸カルボキシラーゼ(PEPC)の機能調節2015

    • Author(s)
      永野愛、水野裕太、西山真、古園さおり
    • Organizer
      2015年度グラム陽性菌ゲノム機能会議
    • Place of Presentation
      雄山荘(滋賀県・大津市)
    • Year and Date
      2015-08-27
    • Related Report
      2015 Research-status Report
  • [Presentation] 枯草菌EF-Tuのアシル化修飾による翻訳制御機構の解析2015

    • Author(s)
      鈴木祥太、古園さおり
    • Organizer
      2015年度グラム陽性菌ゲノム機能会議
    • Place of Presentation
      雄山荘(滋賀県・大津市)
    • Year and Date
      2015-08-27
    • Related Report
      2015 Research-status Report

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Published: 2015-04-16   Modified: 2019-03-29  

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