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Analysis of alternative splicing regulated by CHERP

Research Project

Project/Area Number 15K14919
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Applied molecular and cellular biology
Research InstitutionKyoto University

Principal Investigator

Masuda Seiji  京都大学, 生命科学研究科, 准教授 (20260614)

Project Period (FY) 2015-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2016: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2015: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywords選択的mRNAスプライシング / CHERP / カルシウム / 遺伝子発現 / 選択的スプライシング
Outline of Final Research Achievements

Alternative mRNA splicing is a fundamental mechanism to produce plenty of protein more than those encoded in its genome. The understanding of alternative splicing will make us to develop the therapy strategy for diseases based on the inadequate miss-splicing.
CHERP is first identified as Ca2+ signaling related protein in the endoplasmic reticulum. Then, CHERP is also localized in the nucleus, suggesting CHERP has another function. Here, I examined the CHERP regulating genes and alternative splicing. To analyze the genome wide expression change of each mRNA and exon, the exon array analysis was performed. To know the function of CHERP, then, GO term analysis was also carried out. The depletion of CHERP caused the decreased expression of cell cycle, mitosis, cytokinesis, meiosis, DNA repair and DNA replication GO term and increased the induction of apoptosis GO term, suggesting that CHERP has a role for cell proliferation and survival by regulating mRNA splicing.

Report

(3 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • Research Products

    (21 results)

All 2017 2016 2015 Other

All Journal Article (3 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 3 results,  Open Access: 3 results,  Acknowledgement Compliant: 1 results) Presentation (15 results) (of which Int'l Joint Research: 4 results,  Invited: 1 results) Remarks (3 results)

  • [Journal Article] The isoflavone fraction from soybean presents mRNA maturation inhibition activity2017

    • Author(s)
      Kurata M, Murata Y, Momma K, Fouad Ali Mursi I, Takahashi M, Miyamae Y, Kambe T, Nagao M, Narita H, Shibuya Y, Masuda S
    • Journal Title

      Biosci Biotechnol Biochem

      Volume: 81 Issue: 3 Pages: 551-554

    • DOI

      10.1080/09168451.2016.1249451

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The PP-motif in luminal loop 2 of ZnT transporters plays a pivotal role in TNAP activation2016

    • Author(s)
      Fujimoto S, Tsuji T, Fujiwara T, Takeda T, Merriman C, Fukunaka A, Nishito Y, Fu D, Hoch E, Sekler I, Fukue K, Miyamae Y, Masuda S, Nagao M, Kambe T
    • Journal Title

      Biochem. J

      Volume: 473 Issue: 17 Pages: 2611-2621

    • DOI

      10.1042/bcj20160324

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Tetrandrine induces lipid accumulation through blockade of autophagy in a hepatic stellate cell line2016

    • Author(s)
      Miyamae Y, Nishito Y, Nakai N, Nagumo Y, Usui T, Masuda S, Kambe T, Nagao M
    • Journal Title

      Biochem Biophys Res Commun

      Volume: 477 Issue: 1 Pages: 40-46

    • DOI

      10.1016/j.bbrc.2016.06.018

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] mRNA成熟阻害活性を持つフラボノイドの作用機序の解明2017

    • Author(s)
      倉田雅志 増田誠司
    • Organizer
      日本農芸化学会2017年度大会
    • Place of Presentation
      京都女子大学(京都・京都)
    • Year and Date
      2017-03-20
    • Related Report
      2016 Annual Research Report
  • [Presentation] The elucidation of the mechanism by which flavonoids inhibit mRNA processing 15th INTERNATIONAL STUDENT SEMINAR 2017

    • Author(s)
      倉田雅志 渋谷恭之 増田誠司
    • Organizer
      15th INTERNATIONAL STUDENT SEMINAR
    • Place of Presentation
      芝蘭会館(京都・京都)
    • Year and Date
      2017-02-23
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] mRNA成熟阻害活性を持つ食品由来成分の探索と作用機序の解明2017

    • Author(s)
      倉田雅志 増田誠司
    • Organizer
      第498回日本農芸化学会関西支部講演会
    • Place of Presentation
      京都大学百周年時計台記念館(京都・京都)
    • Year and Date
      2017-02-04
    • Related Report
      2016 Annual Research Report
  • [Presentation] MPP6によるヒト核内エキソソーム活性化の分子機構2016

    • Author(s)
      重本真紀、藤原奈央子、増田誠司
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(横浜・神奈川)
    • Year and Date
      2016-12-01
    • Related Report
      2016 Annual Research Report
  • [Presentation] A Dual function of MPP6 to stimulate the nuclear exosome2016

    • Author(s)
      Naoko Fujiwara, Maki Shigemoto, and Seiji Masada
    • Organizer
      RNA2016
    • Place of Presentation
      京都国際会議場(京都・京都)
    • Year and Date
      2016-06-28
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 大豆中のmRNA成熟阻害活性の同定・構造活性相関・作用基盤の解明2016

    • Author(s)
      増田誠司
    • Organizer
      日本農芸化学会大会
    • Place of Presentation
      札幌
    • Year and Date
      2016-03-28
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] A Molecular mechanism to recognize distinct target mRNAs by UAP56 and URH49, the two closely related DEAD-box helicases.2016

    • Author(s)
      Kenichi Fujita, Misa Ito and Seiji Masuda
    • Organizer
      The 14th International Student Seminar
    • Place of Presentation
      京都
    • Year and Date
      2016-03-11
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] The interactome analysis of PABPN1 in the nucleus of HeLa cells2016

    • Author(s)
      Intisar F. A. Mulsi, Naoko Fujiwara and Seiji Masuda
    • Organizer
      The 14th International Student Seminar
    • Place of Presentation
      京都
    • Year and Date
      2016-03-11
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] mRNA核外輸送因子UAP56とURH49が異なる標的mRNA群を認識する仕組み2015

    • Author(s)
      藤田賢一、伊藤慶紗、増田誠司
    • Organizer
      RNA frontier Meeting
    • Place of Presentation
      蔵王
    • Year and Date
      2015-12-10
    • Related Report
      2015 Research-status Report
  • [Presentation] 異なる複合体を形成するmRNA輸送因子UAP56およびURH49の三次元構造解析2015

    • Author(s)
      伊藤慶紗、藤田賢一、増田誠司
    • Organizer
      日本分子生物学会・日本生化学会合同大会
    • Place of Presentation
      神戸
    • Year and Date
      2015-12-03
    • Related Report
      2015 Research-status Report
  • [Presentation] mRNA核外輸送共役因子UAP56ならびにURH49における複合体形成と選択的mRNA輸送の制御基盤2015

    • Author(s)
      藤田賢一、伊藤慶紗、増田誠司
    • Organizer
      日本分子生物学会・日本生化学会合同大会
    • Place of Presentation
      神戸
    • Year and Date
      2015-12-03
    • Related Report
      2015 Research-status Report
  • [Presentation] 哺乳類mRNA核外輸送受容体補因子NXT遺伝子の多様化によるmRNA核外輸送ならびに遺伝子発現の制御2015

    • Author(s)
      猪瀬春子、増田誠司
    • Organizer
      日本分子生物学会・日本生化学会合同大会
    • Place of Presentation
      神戸
    • Year and Date
      2015-12-03
    • Related Report
      2015 Research-status Report
  • [Presentation] 異なる複合体を形成するmRNA輸送因子UAP56およびURH49の構造解析2015

    • Author(s)
      伊藤慶紗、藤田賢一、増田誠司
    • Organizer
      日本RNA学会
    • Place of Presentation
      札幌
    • Year and Date
      2015-07-16
    • Related Report
      2015 Research-status Report
  • [Presentation] mRNA核外輸送因子UAP56ならびにURH49における複合体形成基盤と選択的mRNA輸送制御機構の解明2015

    • Author(s)
      藤田賢一、伊藤慶紗、増田誠司
    • Organizer
      日本RNA学会
    • Place of Presentation
      札幌
    • Year and Date
      2015-07-16
    • Related Report
      2015 Research-status Report
  • [Presentation] 人工的mRNA核外輸送システムによる組換えタンパク質高効率発現系の構築2015

    • Author(s)
      猪瀬春子、増田誠司
    • Organizer
      日本動物細胞工学会
    • Place of Presentation
      仙台
    • Year and Date
      2015-07-09
    • Related Report
      2015 Research-status Report
  • [Remarks] 京都大学大学院生命科学研究科分子応答機構学

    • URL

      http://www.lif.kyoto-u.ac.jp/j/?post_type=labos&p=160

    • Related Report
      2016 Annual Research Report
  • [Remarks] 京都大学大学院生命科学研究科分子応答機構学増田グループ

    • URL

      http://www.bunshioutou.lif.kyoto-u.ac.jp/masuda/index

    • Related Report
      2016 Annual Research Report
  • [Remarks] 京都大学大学院生命科学研究科分子応答機構学教室

    • URL

      http://www.bunshioutou.lif.kyoto-u.ac.jp

    • Related Report
      2015 Research-status Report

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Published: 2015-04-16   Modified: 2018-03-22  

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