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Functional analysis of the DNA region contributing to higher structure formation of chromosome

Research Project

Project/Area Number 15K15076
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field General medical chemistry
Research InstitutionKanagawa Academy of Science and Technology

Principal Investigator

Kondo Takashi  公益財団法人神奈川科学技術アカデミー, 未病改善食品評価法開発プロジェクト, 研究員 (40333299)

Project Period (FY) 2015-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2016: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2015: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywordsゲノム医化学 / 染色体立体配座 / 遺伝子発現制御 / 個体発生 / Meis2遺伝子座 / マウス / エピジェネティクス / 発生 / 遺伝子発現
Outline of Final Research Achievements

Recent studies suggest that three dimensional structures of chromosomes have important roles in transcriptional regulation or chromosomal replication, however, the mechanisms underlying forming chromosomal three dimensional structures remains unknown. In this work, we made attempt to understand the function of the DNA sequence that we found in a distance of 500 kb from Meis2 promoter and interacting to Meis2 promoter regardless of the transcriptional activity of Meis2.
We tried and succeeded to establish conditional knockout ES cells and mouse line in this funding period. We also found that this DNA region has impact to transcription activities of Meis2 promoter by the conditional deletion of this DNA region. This transcriptional pattern alterations are very complex and out of expectations, and thus the DNA region reveals that it is not simple enhancer sequence. And also, preliminary results suggest that entire knockout homozygotes are lethal in the very early stages (blastocyst?).

Report

(3 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • Research Products

    (11 results)

All 2016 2015

All Journal Article (6 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 6 results,  Open Access: 4 results,  Acknowledgement Compliant: 3 results) Presentation (5 results) (of which Invited: 3 results)

  • [Journal Article] Coordinated regulation of hepatic and adipose tissue transcriptomes by the oral administration of an amino acid mixture simulating the larval saliva of Vespa species.2016

    • Author(s)
      Shinozaki F, Abe T, Kamei A, Watanabe Y, Yasuoka A, Shimada K, Kondo K, Arai S, Kumagai K, Kondo T, Abe K.
    • Journal Title

      Genes Nutr.

      Volume: 11 Issue: 1 Pages: 1-1

    • DOI

      10.1186/s12263-016-0534-2

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Quantitative deviating effects of maple syrup extract supplementation on the hepatic gene expression of mice fed a high-fat diet.2016

    • Author(s)
      Kamei, A., Watanabe, Y., Shinozaki, F., Yasuoka, A., Shimada, K., Kondo, K., Ishijima, T., Toyoda, T., Arai, S., Kondo, T., and Abe, K.
    • Journal Title

      Mol. Nutr. Food Res.

      Volume: 61 Issue: 2 Pages: 1-15

    • DOI

      10.1002/mnfr.201600477

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] RING1 proteins contribute to early proximal-distal specification of the forelimb bud by restricting Meis2 expression2016

    • Author(s)
      Yakushiji-Kaminatsui, N., Kondo, T., Endo, T.A., Koseki, Y., Kondo, K., Ohara, O., Vidal, M. and Koseki, H.
    • Journal Title

      Development

      Volume: 143 Pages: 276-285

    • DOI

      10.1242/dev.127506

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Polycomb in transcriptional phase transition of developmental genes2016

    • Author(s)
      Kondo, T., Koseki, H. and Ito, S.
    • Journal Title

      Trends Biochem. Sci.

      Volume: 41 Issue: 1 Pages: 9-19

    • DOI

      10.1016/j.tibs.2015.11.005

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Th17 Cell induction by adhesion of microbes to intestinal epithelial cells2015

    • Author(s)
      Atarashi, K., Tanoue, T., Ando. M., Kamada, N., Nagano, Y., Narushima, S., Suda, W., Imaoka, A., Setoyama, H., Nagamori, T., Ishikawa, E., Shima, T., Hara, T., Kado, S., Jinnohara, T., Ohno, H., Kondo, T. et al.
    • Journal Title

      Cell

      Volume: 163 Issue: 2 Pages: 367-380

    • DOI

      10.1016/j.cell.2015.08.058

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Administration of a maple syrup extract to mitigate their hepatic inflammation induced by a high-fat diet: a transcriptome analysis2015

    • Author(s)
      Kamei, A., Watanabe, Y., Shinozaki, F., Yasuoka, A., Kondo, T., Ishijima, T., Toyoda, T., Arai, S. and Abe, K.
    • Journal Title

      Biosci. Biotechnol. Biochem.

      Volume: 18 Pages: 1-5

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Presentation] 高脂肪食摂取に対する応答性のマウス系統差  ― 網羅的遺伝子発現解析より2016

    • Author(s)
      亀井飛鳥、渡部由貴、篠﨑文夏、安岡顕人、近藤香、嶋田耕育、阿部啓子、近藤隆
    • Organizer
      第70回日本栄養・食糧学会大会
    • Place of Presentation
      神戸
    • Related Report
      2016 Annual Research Report
  • [Presentation] Enhancer action on a developmental regulatory gene repressed by Polycomb2016

    • Author(s)
      近藤隆、近藤香、椙下紘貴、伊藤伸介、阿部啓子、古関明彦
    • Organizer
      日本分子生物学会 2016年大会
    • Place of Presentation
      横浜
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 発生遺伝子群のプロモーター制御において異性型Polycomb複合体は従来型と異なる活性を持つ2015

    • Author(s)
      近藤 隆、近藤 香、椙下 紘貴、古関 明彦
    • Organizer
      日本分子生物学会年会
    • Place of Presentation
      神戸ポートピアホテル
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] 機能性食品とエピジェネティクス2015

    • Author(s)
      安岡 顕人, 嶋田 耕育, 亀井 飛鳥, 篠崎 文夏, 近藤 香, 近藤 隆, 三坂 巧, 岡田 晋治, 阿部 啓子
    • Organizer
      日本分子生物学会年会
    • Place of Presentation
      神戸ポートピアホテル
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] 異性型ポリコーム複合体構成因子の欠損がES細胞の分化に与える影響2015

    • Author(s)
      椙下 紘貴、近藤 隆、伊藤 伸介、近藤 香、古関 明彦
    • Organizer
      日本分子生物学会年会
    • Place of Presentation
      神戸ポートピアホテル
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report

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Published: 2015-04-16   Modified: 2018-03-22  

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