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Development of microdevice-based high throughput and high sensitivity in situ mRNA analysis method

Research Project

Project/Area Number 15K15199
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Laboratory medicine
Research InstitutionJapan Women's University

Principal Investigator

Sato Kae  日本女子大学, 理学部, 准教授 (40373310)

Co-Investigator(Renkei-kenkyūsha) NISHIHARA Hiroshi  北海道大学, 医学研究科, 教授 (50322805)
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥3,770,000 (Direct Cost: ¥2,900,000、Indirect Cost: ¥870,000)
Fiscal Year 2016: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2015: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywords遺伝子分析 / マイクロデバイス / DNA / マイクロ流路 / mRNA / Padlock probe / 組織切片
Outline of Final Research Achievements

In this study, we aimed to improve the efficiency of padlock/RCA by determining the effects of microchannel shape and ultrasonic solution mixing. Using a circular-shaped microchamber and ultrasonic mixing, the efficiency of microfluidic padlock/RCA was improved, and the consumption of the expensive probe solution was reduced from 10 uL to approximately 3.5 uL. Moreover, the fluorescent probe hybridization time was reduced to 5 min, which is four times faster than that of the standard protocol. We used this method to successfully detect mitochondrial DNA and transcripts of β-actin and K-ras proto-oncogene codon 12 in cells.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (5 results)

All 2017 2016 2015

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Acknowledgement Compliant: 2 results,  Open Access: 1 results) Presentation (3 results) (of which Int'l Joint Research: 2 results)

  • [Journal Article] Molecular crowding improves bead-based padlock rolling circle amplification2017

    • Author(s)
      N Sasaki, Y Gunji, C Kase, K Sato
    • Journal Title

      Analytical Biochemistry

      Volume: 519 Pages: 15-18

    • DOI

      10.1016/j.ab.2016.12.002

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Microdevice in Cellular Pathology: Microfluidic Platforms for Fluorescence <i>in situ</i> Hybridization and Analysis of Circulating Tumor Cells2015

    • Author(s)
      K. Sato
    • Journal Title

      Analytical Sciences

      Volume: 31 Issue: 9 Pages: 867-873

    • DOI

      10.2116/analsci.31.867

    • NAID

      130005097926

    • ISSN
      0910-6340, 1348-2246
    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Microfluidic-based in situ padlock probe rolling-circle amplification for mRNA analysis2017

    • Author(s)
      C. Kase, Y. Ishigaki, and K. Sato
    • Organizer
      The 21st International Conference on Miniaturized Systems for Chemistry and Life Sciences, microTAS 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] マイクロチップを用いた細胞内Padlock/RCA法による遺伝子分析の高効率化2016

    • Author(s)
      佐藤 香枝 ・ 石垣 有理
    • Organizer
      日本分析化学会第65年会
    • Place of Presentation
      北海道大学
    • Year and Date
      2016-09-16
    • Related Report
      2016 Research-status Report
  • [Presentation] Optimization of microfluidic-based in situ padlock rolling circle amplification2015

    • Author(s)
      Y. Ishigaki, K. Sato
    • Organizer
      Micro Total Analysis Systems 2015
    • Place of Presentation
      Gyeongju(韓国)
    • Year and Date
      2015-10-26
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research

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Published: 2015-04-16   Modified: 2019-03-29  

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