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Non-rigid image alignment baed on a local deformation of kernel density functions

Research Project

Project/Area Number 15K16087
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Life / Health / Medical informatics
Research InstitutionKyushu Institute of Technology

Principal Investigator

Terumasa Tokunaga  九州工業大学, 大学院情報工学研究院, 准教授 (50614806)

Project Period (FY) 2015-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Fiscal Year 2016: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2015: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords統計学 / ベイズ推論 / 機械学習 / 画像処理 / データ科学 / 計算統計 / バイオイメージインフォマティクス / 非剛体イメージアライメント / 非剛体イメージレジストレーション / EMアルゴリズム / マルコフ確率場 / 医療画像処理 / 最適化 / データサイエンス / 非剛体イメージレジアライメント / データ欠損 / 位置合わせ
Outline of Final Research Achievements

Recent rapid advance of imaging techniques has produced a massive amount of imaging data in many fields, including biology and medical imaging. Image alignment ( or image registration ) is a process of transforming different set of imaging data measured at different environment into a common coordinate system. It is a core tool for analyzing fMRI, CT, MR images and other medical images. However, the existing alignment techniques often fail to aligning tubular objects ( e.g., blood vessels and neurites). In this work, we developed a new non-rigid image alignment technique based on the idea of a local deformation of kernel density functions. The proposed method begins by performing kernel density estimation to convert digital images into a continuous function. Then, the alignment problem is solved by minimizing the distance between two probability density functions based on EM algorithm. In some experiments, our method achieved a robust optimization for aligning tubular objects.

Report

(3 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • Research Products

    (22 results)

All 2017 2016 2015

All Presentation (22 results) (of which Int'l Joint Research: 9 results,  Invited: 3 results)

  • [Presentation] Whole neural network analysis of C. elegans using an automated image processing pipeline2017

    • Author(s)
      Stephen Wu, Terumasa Tokunaga, Osamu Hirose, Yu Toyoshima, Takayuki Teramoto, Yuishi Iwasaki, Takeshi Ishihara, Yuichi Iino, Ryo Yoshida
    • Organizer
      International Workshop on Quantitative Biology 2017
    • Place of Presentation
      慶応義塾大学(神奈川県横浜市港北区日吉4-1-1 )
    • Year and Date
      2017-04-14
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 線虫の中枢神経系全体の カルシウムイメージングによる神経回路メカニズムの解析2017

    • Author(s)
      石原健, 寺本孝行, 豊島有, 徳永旭将, ステファン・ウー, 広瀬修, 大江紗, ジャン・ム ンソン, 佐藤博文, 滝沢拓 己, 久下小百合, 岩崎唯史, 吉田亮, 飯野雄一, 石健
    • Organizer
      生命動態四拠点・CREST・ PRESTO・QBiC合同シンポジウム
    • Place of Presentation
      理化学研究所生命システム研究センター(大阪府吹田市古江台6丁目2-4)
    • Year and Date
      2017-03-17
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 生物学や環境科学周辺におけるベイズ統計の応用2017

    • Author(s)
      徳永旭将
    • Organizer
      JSBi九州地域部会セミナー
    • Place of Presentation
      海峡メッセ下関(山口県下関市豊前田町3丁目3-1)
    • Year and Date
      2017-03-10
    • Related Report
      2016 Annual Research Report
  • [Presentation] 線虫C.elegansの頭部神経 系全体のGCaMP6fを用いた活動解析2016

    • Author(s)
      Suzu Oe, Takumi Katsume, Takayuki Teramoto, Yu Toyoshima, Terumasa Tokunaga, Stephan Wu, Osamu Hirose, Jang Moon- Sun, Hirofumi Sato, Hiroki Takizawa, Sayuri Kuge, Yuishi Iwasaki, Ryo Yoshida, Yuichi Iino, Takeshi Ishihara
    • Organizer
      第39回日本分子生物学会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市西区みなとみらい1丁目1-1)
    • Year and Date
      2016-11-30
    • Related Report
      2016 Annual Research Report
  • [Presentation] Whole Brain Imaging of Caenorhabditis Elegans × Machine Learning2016

    • Author(s)
      Stephen Wu, Terumasa Tokunaga, Osamu Hirose, Yu Toyoshima, Takayuki Teramoto, Yuishi Iwasaki, Takeshi Ishihara, Yuichi Iino, Ryo Yoshida
    • Organizer
      第5回生命医療情報学連合大会
    • Place of Presentation
      東京国際交流館プラザ平成(東京お台場)
    • Year and Date
      2016-09-26
    • Related Report
      2016 Annual Research Report
  • [Presentation] 機械学習に基づく線虫Cエレガンスの全脳イメージング解析2016

    • Author(s)
      Stephen Wu, Terumasa Tokunaga, Osamu Hirose, Yu Toyoshima, Takayuki Teramoto, Yuishi Iwasaki, Takeshi Ishihara, Yuichi Iino, Ryo Yoshida
    • Organizer
      統計関連連合大会2016
    • Place of Presentation
      金沢大学(石川県金沢市角間町)
    • Year and Date
      2016-09-04
    • Related Report
      2016 Annual Research Report
  • [Presentation] Whole-brain imaging reveals the roles of gap junctions for the synchronized oscillatory2016

    • Author(s)
      Takayuki Teramoto, Terumasa Tokunaga, Osamu Hirose, Yu Toyoshima, Yuishi Iwasaki, Yuichi Iino, Ryo Yoshida, Takeshi Ishihara
    • Organizer
      C. elegans Topic Meeting: neurlnal development, synaptic function & behavior
    • Place of Presentation
      名古屋大学(愛知県名古屋市千種区不老町)
    • Year and Date
      2016-07-27
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Correlation clustering reveals intrinsic graph structure of whole-brain imaging data2016

    • Author(s)
      Hiromu Sakuma,Takayuki Teramoto, Terumasa Tokunaga, Osamu Hirose, Yu Toyoshima, Yuishi Iwasaki, Yuichi Iino, Ryo Yoshida, Takeshi Ishihara
    • Organizer
      C. elegans Topic Meeting: neurlnal development, synaptic function & behavior
    • Place of Presentation
      名古屋大学(愛知県名古屋市千種区不老町)
    • Year and Date
      2016-07-27
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] A machine learning pipeline for whole brain imaging of Caenorhabditis elegans: cell tracking, quantification, annotation and visualization2016

    • Author(s)
      Stephen Wu, Terumasa Tokunaga, Osamu Hirose, Yu Toyoshima, Takayuki Teramoto, Yuishi Iwasaki, Takeshi Ishihara, Yuichi Iino, Ryo Yoshida
    • Organizer
      バイオイメージインフォマティクスワークショップ2016
    • Place of Presentation
      大阪大学(大阪府吹田市山田丘2-2)
    • Year and Date
      2016-06-22
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 輪郭マッチングと手続き型モデリングに基づく3Dモデルの自動生成2016

    • Author(s)
      本城伸隆、徳永旭将
    • Organizer
      Visual Computing/グラフィックスとCAD合同シンポジウム2016
    • Place of Presentation
      早稲田大学(東京都新宿区 西早稲田1-20-14)
    • Year and Date
      2016-06-18
    • Related Report
      2016 Annual Research Report
  • [Presentation] 生物学や環境科学周辺におけるベイズ統計の応用2016

    • Author(s)
      徳永旭将
    • Organizer
      九州大学数理科学研究院統計数理セミナー
    • Place of Presentation
      九州大学(福岡県福岡市西区元岡744)
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] A machine learning pipeline for whole brain imaging of Caenorhabditis elegans: cell tracking, quantification, annotation and visualization2016

    • Author(s)
      Stephen Wu, 徳永旭将, 広 瀬修, 豊島有, 寺本孝行, 岩 崎唯史, 石原健, 飯野雄一, 吉田亮
    • Organizer
      BioImage Informatics conference 2016
    • Place of Presentation
      Breakthrough & Discovery Theatrette, Level 4 Matrix, Biopolis, 30 Biopolis Street (Singapore)
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 単一細胞トラッキングを用いた血管内皮細胞動態解析2015

    • Author(s)
      田久保 直子, 苗村 和明, 吉田 亮, 徳永 旭将, 広瀬 修, 内島 泰信, 栗原 由紀子, 栗原 祐基
    • Organizer
      第12回血管生物医学会学術集会
    • Place of Presentation
      神戸国際会議場
    • Year and Date
      2015-12-08
    • Related Report
      2015 Research-status Report
  • [Presentation] Intrinsic graph structure estimation from whole-brain imaging data of C. elegans2015

    • Author(s)
      Hiromu Sakuma, Takayuki Teramoto, Sayuri Kuge, Terumasa Tokunaga, Osamu Hirose, Yu Toyoshima, Yuichi Iino, Ryo Yoshida, Takeshi Ishihara, Yuishi Iwasaki
    • Organizer
      International Conference on Systems Biology 2015
    • Place of Presentation
      Biopolis, Singapore
    • Year and Date
      2015-11-23
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] SPF-CellTracker: Tracking multiple cells with strongly-correlated moves using a spatial particle filter2015

    • Author(s)
      Osamu Hirose, Syotaro Kawaguchi, Terumasa Tokunaga, Yu Toyoshima, Takayuki Teramoto, Sayuri Kuge, Takeshi Ishihara, Yuichi Iino, Ryo Yoshida
    • Organizer
      BioImage Informatics 2015
    • Place of Presentation
      National Institute of Standards and Technology , USA
    • Year and Date
      2015-10-14
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] 血管新生における内皮細胞動態ライブイメージング2015

    • Author(s)
      田久保 直子, 苗村 和明, 吉田 亮, 徳永 旭将, 広瀬 修, 内島 泰信, 栗原 由紀子, 栗原 裕基
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス
    • Year and Date
      2015-09-13
    • Related Report
      2015 Research-status Report
  • [Presentation] SPF-CellTracker: Tracking multiple cells with strongly-correlated moves using a spatial particle filter2015

    • Author(s)
      Osamu Hirose, Syotaro Kawaguchi, Terumasa Tokunaga, Yu Toyoshima, Takayuki Teramoto, Sayuri Kuge, Takeshi Ishihara, Yuichi Iino, Ryo Yoshida
    • Organizer
      GIW/InCoB 2015
    • Place of Presentation
      お台場未来館
    • Year and Date
      2015-09-09
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Whole-brain imaging of C. elegans reveals multi-neuronal dynamics under non-stimulus condition2015

    • Author(s)
      寺本 孝行, 徳永 旭将, 広瀬 修, 豊島 有, 飯野 雄一, 吉田 亮, 石原 健
    • Organizer
      第38回日本神経科学大会
    • Place of Presentation
      神戸国際会議場•神戸国際展示場
    • Year and Date
      2015-07-28
    • Related Report
      2015 Research-status Report
  • [Presentation] Whole-brain imaging at cellular resolution reveals multi-neuronal dynamics under non-stimulus condition2015

    • Author(s)
      Takayuki Teramoto, Terumasa Tokunaga, Osamu Hirose, Yu Toyoshima, Yuichi Iino, Ryo Yoshida, Takeshi Ishihara
    • Organizer
      International Worm Meeting 2015
    • Place of Presentation
      UCLA, USA
    • Year and Date
      2015-06-24
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] 空間粒子フィルタによる多数の細胞の同時追跡2015

    • Author(s)
      広瀬 修, 川口 翔太郎, 徳永 旭将, 豊島 有, 寺本 孝之, 久下 小百合, 石原 健, 飯野 雄一, 吉田 亮
    • Organizer
      第21回IBISML研究会
    • Place of Presentation
      沖縄科学技術大学院大学
    • Year and Date
      2015-06-23
    • Related Report
      2015 Research-status Report
  • [Presentation] 空間粒子フィルタによる多細胞追跡2015

    • Author(s)
      広瀬 修, 徳永 旭将, 豊島 有, 寺本 孝行, 久下 小百合, 石原 健, 飯野 雄一, 吉田 亮
    • Organizer
      バイオイメージインフォマティクスワークショップ2015
    • Place of Presentation
      九州大学病院キャンパス
    • Year and Date
      2015-06-18
    • Related Report
      2015 Research-status Report
  • [Presentation] 3次元的に密集した細胞核の高精度な自動認識手法2015

    • Author(s)
      豊島 有, 徳永 旭将, 広瀬 修, 寺本 孝行, 張 文瑄, 久下 小百合, 石原 健, 吉田 亮, 飯野 雄一
    • Organizer
      バイオイメージインフォマティクスワークショップ2015
    • Place of Presentation
      九州大学病院キャンパス
    • Year and Date
      2015-06-18
    • Related Report
      2015 Research-status Report

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Published: 2015-04-16   Modified: 2018-03-22  

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