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Structure Analysis and Structure-Activity Relationship Study of an Antifungal Natural Product Amphidinol 3

Research Project

Project/Area Number 15K17857
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Synthetic chemistry
Research InstitutionKyushu University

Principal Investigator

Ebine Makoto  九州大学, 理学研究院, 助教 (70545574)

Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2017: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2016: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2015: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords有機合成化学 / 天然物化学 / 構造改訂 / 全合成 / 抗真菌活性 / 構造活性相関 / 絶対立体配置の確認 / 全合成研究 / 天然有機化合物 / 構造確認
Outline of Final Research Achievements

Amphidinol 3 (AM3) is an antifungal marine natural product isolated from the dinoflagellate Amphidinium klebsii. Because of its complex structure and huge molecular size, the determined structure needs to be confirmed. Actually, we previously revised the C2 and C51 configuration by chemical synthesis of partial structure and its chemical correlation, mainly using NMR analysis.
In this research, we carried out 1) the synthesis of C31-C67 part of AM3 and its C32-C38 diastereomer, 2) the degradation of synthetic intermediates to give C33-C50 fragments of proposed AM3 and its and C32-C38 diastereomer, 3) the comparison of their NMR data to those of natural product. These experiments clarified the C32-C36 and C38 configurations of AM3 to be revised, which was further confirmed by first total synthesis. Moreover, structure-activity relationship study using artificial truncated analog suggested that both two THP rings are essential to induce the desired antifungal activity.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (19 results)

All 2018 2017 2016 2015

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (17 results) (of which Int'l Joint Research: 6 results,  Invited: 1 results)

  • [Journal Article] Synthesis and stereochemical revision of the C31-C67 section of amphidinol 32018

    • Author(s)
      Yuma Wakamiya, Makoto Ebine, Mariko Murayama, Hiroyuki Omizu, Nobuaki Matsumori, Michio Murata, Tohru Oishi
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 印刷中 Issue: 21 Pages: 6060-6064

    • DOI

      10.1002/anie.201712167

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 1.Synthesis of a Truncated Analog of Amphidinol 3 Corresponding to the C21-C39/C52-C67 Section2017

    • Author(s)
      Makoto Ebine, Yuri Takada, Naoto Yanai, and Tohru Oishi
    • Journal Title

      Chemistry Letters

      Volume: 46 Issue: 5 Pages: 662-664

    • DOI

      10.1246/cl.170050

    • NAID

      130005655614

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Synthesis, structure analysis, and structure-activity relationship studies on the antifungal marine natural product amphidinol 32018

    • Author(s)
      Makoto Ebine
    • Organizer
      First Diversity Symposium for Women Scientist in Kyushu University -Fields of STEM-
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Synthetic studies on amphidinol 32018

    • Author(s)
      Yuma Wakamiya, Makoto Ebine, Tohru Oishi
    • Organizer
      IRCCS-JST CREST Joint Symposium
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Synthetic studies on amphidinol 32017

    • Author(s)
      Makoto Ebine, Yuma Wakamiya, Tohru Oishi
    • Organizer
      18th Tetrahedron Symposium Asia Edition
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Synthetic studies on amphidinol 32017

    • Author(s)
      Yuma Wakamiya, Makoto Ebine, Tohru Oishi
    • Organizer
      The 11th International Symposium on Integrated Synthesis & International Symposium on Middle Molecular Strategy
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Synthetic studies on amphidinol 32017

    • Author(s)
      Yuma Wakamiya, Makoto Ebine, Tohru Oishi
    • Organizer
      International Symposium on Pure & Applied Chemistry
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] アンフィジノール3のC31-C67部分の合成と絶対配置の確認2017

    • Author(s)
      若宮佑真、海老根真琴、大石徹
    • Organizer
      日本化学会第64春季年会
    • Place of Presentation
      神奈川県横浜市
    • Related Report
      2016 Research-status Report
  • [Presentation] アンフィジノール3のC31-C67部分の合成研究2016

    • Author(s)
      若宮 佑真、海老根 真琴、大石 徹
    • Organizer
      日本化学会第96春季年会
    • Place of Presentation
      京都府京田辺市
    • Year and Date
      2016-03-24
    • Related Report
      2015 Research-status Report
  • [Presentation] Synthetic Study of the C31-C67 Part of Amphidinol 32016

    • Author(s)
      Yuma Wakamiya, Makoto Ebine, Tohru Oishi
    • Organizer
      The 5th International Conference on MEXT Project of Integrated Research on Chemical Synthesis “Chemical Science for Future Societies”
    • Place of Presentation
      愛知県名古屋市
    • Year and Date
      2016-01-29
    • Related Report
      2015 Research-status Report
  • [Presentation] Synthesis and confirmation of the absolute configuration of the C31-C67 section of amphidinol 32016

    • Author(s)
      Yuma Wakamiya, Makoto Ebine, Tohru Oishi
    • Organizer
      The 6th Junior International Conference on Cutting-edge Organic Chemistry in Asia
    • Place of Presentation
      福岡県春日市
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] アンフィジノール3のC31-C67部分の合成研究2016

    • Author(s)
      若宮佑真、村山真理子、高田悠里、海老根真琴、大石徹
    • Organizer
      第109回有機合成シンポジウム
    • Place of Presentation
      東京都目黒区
    • Related Report
      2016 Research-status Report
  • [Presentation] アンフィジノール3のC31-C67部分の合成と絶対配置の確認2016

    • Author(s)
      若宮佑真、海老根真琴、大石徹
    • Organizer
      第53回化学関連支部合同九州大会
    • Place of Presentation
      福岡県北九州市
    • Related Report
      2016 Research-status Report
  • [Presentation] アンフィジノール3のC31-C67部分の合成と絶対配置の確認2016

    • Author(s)
      若宮佑真、海老根真琴、大石徹
    • Organizer
      第28回若手研究者のためのセミナー
    • Place of Presentation
      福岡県福岡市
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] Development of molecular probes based on the partial structure of Amphidinol 32015

    • Author(s)
      Yuri Takada, Makoto Ebine, Tohru Oishi
    • Organizer
      Pacifichem 2015
    • Place of Presentation
      Honolulu, Hawaii, USA
    • Year and Date
      2015-12-17
    • Related Report
      2015 Research-status Report
  • [Presentation] Synthetic Study of the C31-C67 part of the Amphidinol 32015

    • Author(s)
      Yuma Wakamiya, Makoto Ebine, Tohru Oishi
    • Organizer
      Pacifichem 2015
    • Place of Presentation
      Honolulu, Hawaii, USA
    • Year and Date
      2015-12-17
    • Related Report
      2015 Research-status Report
  • [Presentation] アンフィジノール3のC31-C52部分の合成研究2015

    • Author(s)
      若宮 佑真、海老根 真琴、大石 徹
    • Organizer
      第27回若手研究者のためのセミナー
    • Place of Presentation
      福岡県福岡市
    • Year and Date
      2015-08-29
    • Related Report
      2015 Research-status Report
  • [Presentation] Development of Molecular Probes Based on the Partial Structure of Amphidinol 32015

    • Author(s)
      Yuri Takada, Makoto Ebine, Tohru Oishi
    • Organizer
      第52回化学関連支部合同九州大会・日本化学会九州支部設立100周年記念国際シンポジウム
    • Place of Presentation
      福岡県北九州市
    • Year and Date
      2015-06-27
    • Related Report
      2015 Research-status Report
  • [Presentation] アンフィジノール3のC31-C42部分の合成研究2015

    • Author(s)
      若宮 佑真、海老根 真琴、大石 徹
    • Organizer
      第52回化学関連支部合同九州大会
    • Place of Presentation
      福岡県北九州市
    • Year and Date
      2015-06-27
    • Related Report
      2015 Research-status Report

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Published: 2015-04-16   Modified: 2019-03-29  

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