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Identification of ribozyme catalyzes DNA methylation to develop gene specific DNA methylation system

Research Project

Project/Area Number 15K18278
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Biofunction/Bioprocess
Research InstitutionTokyo University of Technology

Principal Investigator

YOSHIDA Wataru  東京工科大学, 応用生物学部, 助教 (10599806)

Project Period (FY) 2015-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2016: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2015: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Keywordsリボザイム / DNAメチル化 / In vitro selection / DNA四重鎖 / in vitro selection
Outline of Final Research Achievements

The research project aimed to identify ribozyme that catalyzes DNA methylation and develop gene specific DNA methylation system in vivo. To identify the ribozyme, in vitro selection has been performed using RNA random library that contains S-adenosylmethionine (SAM) binding RNA motif, because SAM is natural substrate of DNA methyltransferase. After 4th round selection, the RNA library was enriched, indicating that the ribozyme would be contained in the enriched RNA library. Moreover, we revealed that quadruplex structures in VEGF promoter were stabilized by DNA methylation. Using the property, q-PCR-based DNA methylation level detection system that requires neither sodium bisulfite treatment nor methylated DNA ligands was developed.

Report

(3 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • Research Products

    (5 results)

All 2017 2016 2015

All Journal Article (1 results) (of which Peer Reviewed: 1 results) Presentation (3 results) Book (1 results)

  • [Journal Article] Detection of DNA methylation of G-quadruplex and i-motif-forming sequences by measuring the initial elongation efficiency of PCR2016

    • Author(s)
      Wataru Yoshida, Hitomi Yoshioka, Daniyah Habiballah Bay, Keisuke Iida, Kazunori Ikebukuro, Kazuo Nagasawa, Isao Karube
    • Journal Title

      Anal. Chem.

      Volume: 88 Issue: 14 Pages: 7101-7107

    • DOI

      10.1021/acs.analchem.6b00982

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Presentation] 定量PCR法を用いた四重鎖中のメチル化DNA検出法の開発2016

    • Author(s)
      吉岡仁美、飯田圭介、長澤和夫、池袋一典、軽部征夫、吉田亘
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県、横浜市)
    • Year and Date
      2016-11-30
    • Related Report
      2016 Annual Research Report
  • [Presentation] 定量PCR法を用いたDNA四重鎖中のメチル化CpG検出法の開発2016

    • Author(s)
      吉岡仁美、飯田圭介、長澤和夫、池袋一典、軽部征夫、吉田亘
    • Organizer
      第10回バイオ関連化学シンポジウム
    • Place of Presentation
      もてなしドーム地下イベント広場(石川県、金沢市)
    • Year and Date
      2016-09-07
    • Related Report
      2016 Annual Research Report
  • [Presentation] DNA高次構造の安定性に着目したDNAメチル化検出法の開発2015

    • Author(s)
      吉岡仁美、飯田圭介、長澤和夫、池袋一典、軽部征夫、吉田亘
    • Organizer
      BMB2015
    • Place of Presentation
      神戸ポートアイランド(兵庫県神戸市)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
  • [Book] BIO INDUSTRY (メチル化DNAの簡易計測法の開発)2017

    • Author(s)
      吉田亘、馬場勇次、吉岡仁美、軽部征夫
    • Total Pages
      53
    • Publisher
      シーエムシー出版
    • Related Report
      2016 Annual Research Report

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Published: 2015-04-16   Modified: 2018-03-22  

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