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Analysis of pluripotent stem cell heterogeneity using simultaneous live imaging of gene nuclear localization and transcriptional activity

Research Project

Project/Area Number 15K18467
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field System genome science
Research InstitutionHiroshima University

Principal Investigator

Ochiai Hiroshi  広島大学, 理学研究科, 特任講師 (60640753)

Research Collaborator Liu Zhe  Howard Hughes Medical Institute, Janelia Research Campus, Group Leader
Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2017: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2016: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2015: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywordsクロマチン動態 / 転写 / ライブイメージング / 染色体 / ゲノムDNA / 転写発現 / 遺伝子発現
Outline of Final Research Achievements

Within the cell nucleus, individual chromosomes are kept in individual regions without being completely mixed, and nuclear structures composed of DNA and nuclear proteins are distributed non-uniformly. It is also known that the interaction between the promoters and the distant regulatory elements affects the expression of specific genes. However, the spatial arrangement of chromosomes and nuclear structures is randomly determined for each cell division, and is dynamically fluctuating in interphase, which may cause cell-to-cell heterogeneity in gene expression, but there are many technical difficulties. In this study, we try to establish a simultaneous visualization system of endogenous gene transcription and nuclear localization, and elucidate the mechanism of occurrence of gene expression heterogeneity in mouse embryonic stem cells using this system.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (20 results)

All 2017 2016 2015 Other

All Int'l Joint Research (5 results) Journal Article (2 results) (of which Peer Reviewed: 2 results,  Open Access: 2 results,  Acknowledgement Compliant: 2 results) Presentation (8 results) (of which Int'l Joint Research: 3 results,  Invited: 6 results) Remarks (4 results) Patent(Industrial Property Rights) (1 results)

  • [Int'l Joint Research] HHMI Janelia Campus(米国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Janelia Research Campus, HHMI(米国)

    • Related Report
      2016 Research-status Report
  • [Int'l Joint Research] Howard Hughes Medical Institute(米国)

    • Related Report
      2015 Research-status Report
  • [Int'l Joint Research] University College London(英国)

    • Related Report
      2015 Research-status Report
  • [Int'l Joint Research] Oslo University Hospital(ノルウェー)

    • Related Report
      2015 Research-status Report
  • [Journal Article] Simultaneous live imaging of the transcription and nuclear position of specific genes2016

    • Author(s)
      Hiroshi Ochiai, Takeshi Sugawara, Takashi Yamamoto
    • Journal Title

      Nucleic Acids Research

      Volume: 43 Issue: 19 Pages: e127-e127

    • DOI

      10.1093/nar/gkv624

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Single-Base Pair Genome Editing in Human Cells by Using Site-Specific Endonucleases2015

    • Author(s)
      Hiroshi Ochiai
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 16 Issue: 9 Pages: 21128-21137

    • DOI

      10.3390/ijms160921128

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] 特定内在遺伝子の転写活性および核内局在のライブイメージング2017

    • Author(s)
      落合 博
    • Organizer
      産総研 中国センター シンポジウム ~生命科学の革新的展開~
    • Place of Presentation
      ホテルセンチュリー21広島 (広島県、広島市)
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] Relationship between nuclear dynamics and gene expression noise in pluripotent stem cell2016

    • Author(s)
      Hiroshi Ochiai
    • Organizer
      第68回日本細胞生物学会
    • Place of Presentation
      かずさアカデミアホール (千葉県、木更津市)
    • Year and Date
      2016-06-15
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] Active nuclear dynamics promotes heterochromatin clustering2015

    • Author(s)
      Hiroshi Ochiai
    • Organizer
      The 4th International Symposium of the Mathematics on Chromatin Live Dynamics
    • Place of Presentation
      広島アステールプラザ (広島県・広島市)
    • Year and Date
      2015-12-07
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Simultaneous live imaging of a specific gene's transcription and dynamics2015

    • Author(s)
      Ochiai H., Sugawara T. & Yamamoto T.
    • Organizer
      日本分子生物学会・日本生化学会合同大会BMB2015
    • Place of Presentation
      神戸ポートアイランド (兵庫県・神戸市)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] 間期細胞核ダイナミクスとヘテロクロマチン領域の集合2015

    • Author(s)
      落合 博
    • Organizer
      平成27年度遺伝研研究会 「クロマチン・細胞核構造の形成とダイナミクスによるゲノム機能制御」
    • Place of Presentation
      国立遺伝学研究所 (静岡県・三島市)
    • Year and Date
      2015-10-29
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] Simultaneous live imaging of the transcription and nuclear position of specific genes2015

    • Author(s)
      Hiroshi Ochiai
    • Organizer
      2015 TIC (Transcription Imaging Consortium) meeting
    • Place of Presentation
      Janelia Research Campus (VA), USA
    • Year and Date
      2015-09-10
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 遺伝子の転写活性と各内局在の同時ライブイメージング2015

    • Author(s)
      落合 博
    • Organizer
      第七回 光イメージング若手の会「光塾」
    • Place of Presentation
      広島大学 (広島県・東広島市)
    • Year and Date
      2015-09-05
    • Related Report
      2015 Research-status Report
    • Invited
  • [Presentation] Simultaneous Live Imaging of the Transcription and Nuclear Position of Specific Genes2015

    • Author(s)
      Hiroshi Ochiai
    • Organizer
      International Symposium on Chromatin Structure, Dynamics, and Function
    • Place of Presentation
      淡路夢舞台 (兵庫県・淡路市)
    • Year and Date
      2015-08-23
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Remarks] Researchmap

    • URL

      https://researchmap.jp/HiroshiOchiai/

    • Related Report
      2017 Annual Research Report
  • [Remarks] researchmap

    • URL

      http://researchmap.jp/HiroshiOchiai/

    • Related Report
      2016 Research-status Report
  • [Remarks] Researchmapページ

    • URL

      https://researchmap.jp/HiroshiOchiai/

    • Related Report
      2015 Research-status Report
  • [Remarks] Researchgateページ

    • URL

      https://www.researchgate.net/profile/Hiroshi_Ochiai3

    • Related Report
      2015 Research-status Report
  • [Patent(Industrial Property Rights)] 細胞の作製方法および該作製方法で作製された細胞2015

    • Inventor(s)
      落合 博, 山本 卓
    • Industrial Property Rights Holder
      国立大学法人広島大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2015-080648
    • Filing Date
      2015-04-10
    • Related Report
      2015 Research-status Report

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Published: 2015-04-16   Modified: 2022-06-07  

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