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In vivo analysis of microRNA-mediated post-transcriptional regulation

Research Project

Project/Area Number 15K18476
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Molecular biology
Research InstitutionThe University of Tokyo

Principal Investigator

Mishima Yuichiro  東京大学, 分子細胞生物学研究所, 助教 (00557069)

Project Period (FY) 2015-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2017: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2016: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2015: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywords発生 / マイクロRNA / ゼブラフィッシュ
Outline of Final Research Achievements

Tnrc6 protein family had been considered as an essential factor in microRNA (miRNA)-mediated gene silencing based on previous researches using cultured cells. In this study, we established zebrafish genetic mutant of tnrc6a and tnrc6b and revealed that tnrc6 proteins are indeed essential for miRNA-mediated gene silencing during vertebrate development. We also discovered that codon composition determines mRNA stability independently of miRNA-mediated silencing. Furthermore, we successfully inhibited Dcp2 and Cnot7, two enzymes involved in mRNA decay, in zebrafish embryos. By performing RNA-seq analysis, we revealed the genome-wide requirement of the two enzymes during early embryogenesis.

Report

(4 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • Research Products

    (10 results)

All 2017 2016 2015 Other

All Journal Article (2 results) (of which Peer Reviewed: 2 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (6 results) (of which Int'l Joint Research: 2 results,  Invited: 2 results) Book (1 results) Remarks (1 results)

  • [Journal Article] Pervasive yet nonuniform contributions of Dcp2 and Cnot7 to maternal mRNA clearance in zebrafish2017

    • Author(s)
      Mishima Yuichiro、Tomari Yukihide
    • Journal Title

      Genes to Cells

      Volume: 22 Issue: 7 Pages: 670-678

    • DOI

      10.1111/gtc.12504

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Codon Usage and 3' UTR Length Determine Maternal mRNA Stability in Zebrafish2016

    • Author(s)
      Yuichiro Mishima, Yukihide Tomari
    • Journal Title

      Molecular Cell

      Volume: 61(6) Issue: 6 Pages: 874-85

    • DOI

      10.1016/j.molcel.2016.02.027

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] Codons encode the mRNA stability code that shapes gene expression patterns via the CCR4-NOT complex.2016

    • Author(s)
      三嶋雄一郎
    • Organizer
      第89回日本生化学会大会
    • Place of Presentation
      東北大学(宮城県仙台市)
    • Year and Date
      2016-09-25
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] Hidden function of the genetic code during the maternal to zygotic transition.2016

    • Author(s)
      三嶋雄一郎
    • Organizer
      第22回小型魚類研究集会
    • Place of Presentation
      岡崎カンファレンスセンター(愛知県岡崎市)
    • Year and Date
      2016-08-20
    • Related Report
      2016 Research-status Report
    • Invited
  • [Presentation] The role and mechanism of codon-mediated mRNA decay in animal development2016

    • Author(s)
      三嶋雄一郎
    • Organizer
      The 21st Annual Meeting of the RNA Society
    • Place of Presentation
      京都国際会議場(京都府京都市)
    • Year and Date
      2016-06-28
    • Related Report
      2016 Research-status Report
    • Int'l Joint Research
  • [Presentation] mRNAの翻訳・安定性制御をゼブラフィッシュ胚で可視化する2015

    • Author(s)
      三嶋雄一郎
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド(兵庫県・神戸市)
    • Year and Date
      2015-11-30
    • Related Report
      2015 Research-status Report
  • [Presentation] Codon optimality and 3´UTR length determine maternal mRNA stability in zebrafish2015

    • Author(s)
      Yuichiro Mishima
    • Organizer
      Protein Synthesis and Translational Control
    • Place of Presentation
      ハイデルベルク(ドイツ)
    • Year and Date
      2015-09-09
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] コドン適応度と3´UTRの長さが母性mRNAの安定性を決定する2015

    • Author(s)
      三嶋雄一郎
    • Organizer
      第17回日本RNA学会年会
    • Place of Presentation
      ホテルライフォート札幌(北海道・札幌市)
    • Year and Date
      2015-07-15
    • Related Report
      2015 Research-status Report
  • [Book] ノンコーディングRNAテキストブック2015

    • Author(s)
      三嶋雄一郎
    • Total Pages
      251
    • Publisher
      羊土社
    • Related Report
      2015 Research-status Report
  • [Remarks] UTokyo Research

    • URL

      http://www.u-tokyo.ac.jp/ja/utokyo-research/index.html

    • Related Report
      2015 Research-status Report

URL: 

Published: 2015-04-16   Modified: 2019-03-29  

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