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Functional analysis of newly identified DNA demethylation factors in mouse ES cells and its application to somatic cell reprogramming

Research Project

Project/Area Number 15K18545
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Developmental biology
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Hatanaka Yuki  国立研究開発法人理化学研究所, バイオリソースセンター, 特別研究員 (70719450)

Project Period (FY) 2015-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2016: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2015: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Keywords受精卵 / ES細胞 / DNA脱メチル化 / エピジェネティックリプログラミング / エピゲノム / ヒストン修飾 / 5mCの酸化
Outline of Final Research Achievements

To explore the application to improvements of somatic nuclear reprogramming, we focused on GSE and H3R17me2a enzyme Mettl23 which are newly identified DNA demethylation factors in mouse zygotes. To this end, we first produced their KO mice and investigated the effect of GSE and Mettl23 deficient on the DNA demethylation in ESCs. The levels of 5mC and its oxidative products were not significantly different between wild type (WT) ESCs and these KO. Interestingly, the level of 5fC was significantly increased in their KOESCs on the promoter regions that undergo DNA demethylation in zygote. The loss of GSE and Mettl23 resulted in the impairment of recruitment of TDG, which excises 5fC and 5CaC. The treatment of TBBD (ellagic acid), which specifically inhibits methylation at H3R17, resulted in the reduction of recruitment of GSE and Histone H3.3 on the target regions. These results suggested that GSE and Mettl23 are responsible for DNA demethylation on defined regions in ESCs.

Report

(3 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • Research Products

    (9 results)

All 2017 2016 2015

All Journal Article (4 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 4 results,  Open Access: 4 results,  Acknowledgement Compliant: 1 results) Presentation (5 results) (of which Int'l Joint Research: 2 results,  Invited: 2 results)

  • [Journal Article] The rodent-specific microRNA cluster within the Sfmbt2 gene is imprinted and essential for placental development.2017

    • Author(s)
      Inoue K, Hirose M, Inoue H, Hatanaka Y, Honda A, Hasegawa A, Mochida K, Ogura A.
    • Journal Title

      Cell Reports

      Volume: 印刷中

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] CRISPR/Cas9-mediated genome editing in wild-derived mice: generation of tamed wild-derived strains by mutation of the a (nonagouti) gene2017

    • Author(s)
      Michiko Hirose, Ayumi Hasegawa, Keiji Mochida, Shogo Matoba, Yuki Hatanaka, Kimiko Inoue, Tatsuhiko Goto, Hideki Kaneda, Ikuko Yamada, Tamio Furuse, Kuniya Abe, Yoshihisa Uenoyama, Hiroko Tsukamura, Shigeharu Wakana, Arata Honda, and Atsuo Ogura
    • Journal Title

      Scientific Reports

      Volume: 7 Issue: 1 Pages: 42476-42476

    • DOI

      10.1038/srep42476

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Mouse D1Pas1, a DEAD-box RNA helicase, is required for the completion of first meiotic prophase in male germ cells2016

    • Author(s)
      Inoue H, Ogonuki N, Hirose M, Hatanaka Y, Matoba S, Chuma S, Kobayashi K, Wakana S, Noguchi J, Inoue K, Tanemura K, *Ogura A
    • Journal Title

      Biochem Biophys Res Commun

      Volume: 478 Issue: 2 Pages: 592-8

    • DOI

      10.1016/j.bbrc.2016.07.109

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Histone chaperone CAF-1 mediates repressive histone modifications to protect preimplantation mouse embryos from endogenous retrotransposon.2015

    • Author(s)
      Hatanaka Y, Inoue K, Oikawa M, Kamimura S, Ogonuki N, Kodam E, Ohkawa Y, Tsukada Y, Ogura A.
    • Journal Title

      Proc Natl Acad Sci USA

      Volume: 112 Issue: 47 Pages: 14641-14646

    • DOI

      10.1073/pnas.1512775112

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] マウス受精卵における能動的DNA脱メチル化制御因子の役割2016

    • Author(s)
      畑中勇輝, 越後貫成美, 廣瀬美智子, 本多新, 井上貴美子, 松本和也, 小倉淳郎
    • Organizer
      第109回日本繁殖生物学会
    • Place of Presentation
      麻布大学獣医学部 (神奈川県相模原市)
    • Year and Date
      2016-09-11
    • Related Report
      2016 Annual Research Report
  • [Presentation] Histone H3R17me2a mark recruits Tet3 to initiate active DNA demethylation in mouse zygotes2016

    • Author(s)
      Hatanaka Y, Shimizu N, Morita K, Satoh M, Honda A, Hirose M, Kamimura S, Ogonuki N, Nakamura N, Inoue K, Hosoi Y, Nakano T, Matsumoto K, Ogura A.
    • Organizer
      Mouse Genetics 2016
    • Place of Presentation
      Florida, USA
    • Year and Date
      2016-07-13
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 着床前胚においてヒストンシャペロンCAF-1 は抑制性ヒストン修飾を調節することでレトロトランスポゾン抑制に機能する。2015

    • Author(s)
      畑中勇輝,井上貴美子,及川真実,上村悟氏,越後貫成美,児玉栄一,大川恭行,束田裕一,小倉淳郎
    • Organizer
      第38回日本分子生物学会大会
    • Place of Presentation
      神戸ポートアイランド (神戸)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Research-status Report
  • [Presentation] Histone H3R17me2a Mark Recruits Tet3 to Initiate Active DNA Demethylation in Mouse Zygotes2015

    • Author(s)
      Hatanaka Y, Shimizu N, Morita K, Satoh M, Honda A, Hirose M, Kamimura S, Ogonuki N, Nakamura T, Inoue K, Hosoi Y, Nakano T, Matsumoto K, Ogura A
    • Organizer
      THE 40th NAITO CONFERENCE “Epigenetics―From Histone Code to Therapeutic Strategy”
    • Place of Presentation
      シャトレーゼ ガトーキングダム サッポロ(北海道)
    • Year and Date
      2015-09-15
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] 受精卵における能動的DNA脱メチル化機構2015

    • Author(s)
      畑中勇輝
    • Organizer
      第60回日本生殖医学会学術講演会
    • Place of Presentation
      パシフィコ横浜 (横浜)
    • Year and Date
      2015-04-26
    • Related Report
      2015 Research-status Report
    • Invited

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Published: 2015-04-16   Modified: 2018-03-22  

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